Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00421 ATGGAGAACCATAATAAGGTGCTTATGCTAATGCTATATACTTCCTTCTTTTACTCCATGCCTATTTACTCTATTCAGAACACTCTTACTTCAAATCAGTTTATCCAATACAATGATTCACTTGTTTCTGCAGCTGGAACCTTTGAAGCTGGATTTTTCAACTTTGGAGATCCACAGCGACAATACTTTGGTATATGGTACAACAACATATCACCGAGGACTATTGTGTGGGTTGCCAATAGAAACATGCCAGCACAAAACTCAACAGGAATGTTGAAACTCACTGATCAAGGAAGTCTTGTTATTCTTGATGGCTCCAAAGGCATTATCTGGAACTCCAATTCATCAAGAATTGGAGTGAAGCCAGTTCTTCATCTTTTGGATTCAGGAAATCTTGTTTTGAAAGATGGAAACAACACTGAGAACTTTTTGTGGGAAAGTTTTGATTATCCTGGTAACACTTTCCTTGCTGGAATGCAGCTGAAAAGTAATTTAGTTACTGGTCCATATAGATATCTCACATCTTGGAGAAAACCCGAAGATCCTTCTACAGGCGAGTTTTCGTATAGGATAGATACACATGGTTACCCTCAACTGGTTACTGCAAAGGGAGCAACAATTCTGTATAGAGGAGGGTCATGGAATGGACTTCTTTTCACAGGTGTTCCTTGGCAAAGATTGTATAGAGTATTTAATTTCTCAGCAGTGATCACTGACAAAGAATTTTCTTATCAATATGAAAATCTTGACAATTCAATTATTACAAGAGTGGTGCTAGACCAAAATGGAATTACACAACGTTTTACATGGTCGGATAGGACACAAATTTGGGAGGCTACAACTACTCGTCCTGCAGACGAGTGTGACGCTTATGCTTTGTGTGGTACCAACTCTAATTGCAATGTTAGTGACTTTCCAAAGTGCAAATGCTTGGAAGGTTTCATGCCAAAATCTCAAACACAATGGAATTCATCGAATTGGTCAGATGGGTGTGTAAGGAAAACTAATTTAAATTGTTCCGAAGGAGATGGATTTTGGAAGTACACAAGCATGAAGTTGCCAGATACATCATCATCGTGGTTTAACAAGAGCTTGAGCCTTGAGAAGTGTAAGACAGTGTGTTTGAAAAACTGTTCTTGTACTGCATATGCTAATTTAGATATTAGAGGTAGTGGGAGTGGCTGCTTACTTTGGTTTGACAACATTATGGACATGAGAAACTTTGCGGGACAAGGACAAGACATTTACATACGACTCGCATCTTCAGAATTTGCCCCAGATCATAAAAAGAATAAAAGGAACTTGAAGCGTGTTGGGACTCTTGCAGGAGTTATTGCATTTGTTATAGGACTGACCGTTCTTGTATTGTTCTTGTTAGCATCTAGAAAGAAGCTTGGATGTATAAAAAAGTTATTTCACAAAGTGAAGGATGATGGTGACTTGGCAACAATATTTGAGTTTTCGACCATCACTAATGCAACAAATCACTTCTCTTACAAAAACAAGTTAGGAGAAGGTGGTTTTGGACCGGTGTACAAGGGAATATTGGTAGATGGTCAAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCAATACAAGGAATTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGAAATCTTGTAAAACTTCTTGGTTGTTCTATTCAAAAAGATGAAAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGCTTGGACTACTTTATTTTTGGTACTATGCGAAGCAAATTACTAAATTGGACTAAGCGCTTGGAAATTATTGATGGGATTGCTCGGGGGCTGTTGTATCTCCATCAAGATTCTACGCTAAGAATCATTCATAGAGATGTGAAGGCAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCTGTGGCTAATACAAATACAGTGACGGGAACATATGGATATATGCCTCCGGAATATGCAGTGCATGGATCTTTCTCAATAAAATCTGATGTTTTTAGTTTTGGAGTCGTTGTTCTTGAGATAATTAGCGGTAAGAAGAATAGCGGATTTTGTGACTCTCGACATCGTCTAGACCTTCTTGGGCATGCATGGAGACTATGGATTGAAGAAAGGCCAGAGGAGTTAATAGCTGCTGACATATTATACGATGAGGCCACATGTTCAGAAATAATAAGATTTATTCATGTGGGCCTTTTGTGTGTACAACAACAACCAGAAAATAGGCCTAACATGTCATCTGTGGTCTTTATGTTAAAGGGTGAAAAGTTACTCCCTCAACCAAGTGAACCCGGGTTTTATGCAGGAAGAAATAATAAGAATAGCTCAGATTTTTCAATAAATGAAGCTACAATCACATTGGTAGAGGCCCGATAG 2427 0.3824 MENHNKVLMLMLYTSFFYSMPIYSIQNTLTSNQFIQYNDSLVSAAGTFEAGFFNFGDPQRQYFGIWYNNISPRTIVWVANRNMPAQNSTGMLKLTDQGSLVILDGSKGIIWNSNSSRIGVKPVLHLLDSGNLVLKDGNNTENFLWESFDYPGNTFLAGMQLKSNLVTGPYRYLTSWRKPEDPSTGEFSYRIDTHGYPQLVTAKGATILYRGGSWNGLLFTGVPWQRLYRVFNFSAVITDKEFSYQYENLDNSIITRVVLDQNGITQRFTWSDRTQIWEATTTRPADECDAYALCGTNSNCNVSDFPKCKCLEGFMPKSQTQWNSSNWSDGCVRKTNLNCSEGDGFWKYTSMKLPDTSSSWFNKSLSLEKCKTVCLKNCSCTAYANLDIRGSGSGCLLWFDNIMDMRNFAGQGQDIYIRLASSEFAPDHKKNKRNLKRVGTLAGVIAFVIGLTVLVLFLLASRKKLGCIKKLFHKVKDDGDLATIFEFSTITNATNHFSYKNKLGEGGFGPVYKGILVDGQEIAVKRLSKTSIQGIEEFKNEVKLMATLQHRNLVKLLGCSIQKDEKLLIYEFMPNRSLDYFIFGTMRSKLLNWTKRLEIIDGIARGLLYLHQDSTLRIIHRDVKASNILLDIDMIPKISDFGLARSFMGDQAVANTNTVTGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNSGFCDSRHRLDLLGHAWRLWIEERPEELIAADILYDEATCSEIIRFIHVGLLCVQQQPENRPNMSSVVFMLKGEKLLPQPSEPGFYAGRNNKNSSDFSINEATITLVEAR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00421 808 SMART blect_4 26 151 IPR001480 -
Trre5g00421 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 182 IPR036426 -
Trre5g00421 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Trre5g00421 808 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Trre5g00421 808 SUPERFAMILY Protein kinase-like (PK-like) 484 781 IPR011009 -
Trre5g00421 808 ProSiteProfiles Protein kinase domain profile. 497 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00421 808 CDD PAN_AP_plant 335 420 - -
Trre5g00421 808 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Trre5g00421 808 SMART ntp_6 340 419 IPR003609 -
Trre5g00421 808 Gene3D - 21 148 IPR036426 -
Trre5g00421 808 Pfam Protein tyrosine and serine/threonine kinase 499 767 IPR001245 GO:0004672|GO:0006468
Trre5g00421 808 CDD STKc_IRAK 503 771 - -
Trre5g00421 808 Pfam D-mannose binding lectin 74 177 IPR001480 -
Trre5g00421 808 Gene3D Transferase(Phosphotransferase) domain 1 573 776 - -
Trre5g00421 808 Gene3D Phosphorylase Kinase; domain 1 471 572 - -
Trre5g00421 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 573 777 - -
Trre5g00421 808 PIRSF SRK 2 808 IPR024171 GO:0004674
Trre5g00421 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 419 - -
Trre5g00421 808 Gene3D Hepatocyte Growth Factor 335 418 - -
Trre5g00421 808 CDD B_lectin 27 151 IPR001480 -
Trre5g00421 808 SMART serkin_6 497 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00421 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 572 - -
Trre5g00421 808 Pfam PAN-like domain 339 405 IPR003609 -
Trre5g00421 808 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Trre5g00421 808 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 760 - -
Trre5g00421 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00421 Trre-Chr5 2654626 2658030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00421 426 808 Receptor kinase-like Gene Family AT4G05200 47.317 3.35e-116 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00421 PK_Tyr_Ser-Thr 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00421 - - tpra:123915365 1417.52