Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00420 ATGGAGAACTATAATAAGGTGCTAATGCTAATTGTGTGTACTTTCTTCTTTTGCTCCAAGCCTACTTTCTCTAATCAGAATACTCTTACTACAAATCAGTTTATCCGATACAATGATACCCTTGTTTCTGCAGCTGGAACTTTTGAAGCAGGATTTTTCAACTTTGGTGATCCACAACGCCAATACTTTGGTATATGGTACAAGAGCATATTACCTAGGACTATTGTGTGGGTTGCCAATAGAGACATGCCAGTACAAAACTCAACAGGAATGCTGAAACTCACTGATCAAGGAAGTCTTGTTATTCTTGATGGCTCCAAAGGCATTATCTGGAACTCCAATTCATCAAAAATTGGAGTGAAACCAGTTGTTCTACTTTTGGATTCAGGAAATCTGGTTGTAAAAGATGCAATCAACACCGAGAACTTTTTGTGGGAAAGTTTTGATTATCCTGGTAATACTCTACTTGCTGGAATGAAGCTGAAAAGTAATTTAGTTACCGGTCCATATAGATATCTCACATCTTGGAGAAGCCCTGAAGATCCTGCTCCAGGGGAGTTTTCATATAGGATAGATATACATGGTTATCCTCAACAGGTTACTACAAAGGGAGCAACAATTCTGTATAGAGGAGGGTCATGGAATGGAATTCTTTTCACTGGTGTTTCTTGGCTAAGAAAGCATAGAATCTTGAATTTCTCATTAGTAGTCATTGGCAAAGAACTCTCTTATCAATACGAAAGTCTGAACAATTCAATTATTACTAGAATGGTGCTAGATCCATATGGAACTTCACAACGTTTTATATTGTCAGATAGGACACACATTTGGGAGCCTATATCTTCTCGTCCTGCAGACCAGTGTGATGATTATGCCATCTGTGGTATCAACTCTAACTGCAATATTAATGCATTTCCGATATGTGAATGCTTGGAAGGTTTCATGCCAAAATCGTCGAATTGGTCTGATGGGTGTGTAAGGAAAACACATTTAAATTGTCTCCATGGAGATGGATTTTTACCGTACACAAACATGAAGTTGCCTGATACATCAACATCGTGGTTTGACAAGAGCATGACCCTTAAGGAATGTAAGACAATGTGTTTGAAAAACTGTTCTTGCACTGCATATACAAATTTAGATGTCAGAGACGGGAGTGGCTGCTTACTTTGGTTTGACTATATTGTGGACATGAGAATACATCCAGATCAAGGACAAGAAATTTACATACGACTGGCATCTTCGGAACTTGATCATAGTAAGAATAAGAGGAACTTCAAGCGTGCTGGGATTCTTGCAGGAGTTATTACATTGGTTATAGGACTAACTGTTTTTGTATTGCTCACATCAGTGTATAGAAAGAAGCTTGGGTATATAAAAAATTATTTAACTGGAAGACAAGGTGGTTTTGGACCGGTGTACAAGGGCATAATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTGTCTAAAACATCAGGACAAGGAACTGAGGAATTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGCAATCTTGCAAAGCTTATTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTATGAATTCTTGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACTACACGAAGCAAATTACTAGATTGGACTAAGCGCTTGGAAATTATCAATGGGATTGCTCGGGGACTGCTCTATCTCCATCAAGATTCTACACTAAGAATCATACATAGAGATGTCAAAATAAGCAATATTCTTCTTGATATTGATATGATCCCGAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCTGAGGCAAATACAAATACAGTGACGGGAACACATGGGTATATGCCTCCAGAATATGCAGTGCATGGATCTTTCTCAATAAAATCTGATGTTTTTAGCTTTGGAGTCGTTGTCCTTGAGATAATCAGCGGTAAGAAGAATAGCGGATTTTGTGACCCTCGACATCGTCTAGACCTTCTTGGGCATGCATGGAGACTCTGGATTGATGGAAGGCCAGAGGAGTTAATAGCCGACATATTATATGATGAGGGGATATGTTCAGAAATAATAAGATTTATTCATGTTGGTCTATTGTGTGTACAACAGCAACCAGAAAATAGGCCTAACATGTCATCTGTGGTCTTTATGTTAAAGGGTGAAAAGTTACTTCCCGAACCAAGTGAACCCGGGTTCTATGCAGGAAGAAACCATACGAATAGCACAGAATTTTCTATAAATGAAGCTACAATCTCATTGTTAGAGGCTCGATAG 2310 0.3848 MENYNKVLMLIVCTFFFCSKPTFSNQNTLTTNQFIRYNDTLVSAAGTFEAGFFNFGDPQRQYFGIWYKSILPRTIVWVANRDMPVQNSTGMLKLTDQGSLVILDGSKGIIWNSNSSKIGVKPVVLLLDSGNLVVKDAINTENFLWESFDYPGNTLLAGMKLKSNLVTGPYRYLTSWRSPEDPAPGEFSYRIDIHGYPQQVTTKGATILYRGGSWNGILFTGVSWLRKHRILNFSLVVIGKELSYQYESLNNSIITRMVLDPYGTSQRFILSDRTHIWEPISSRPADQCDDYAICGINSNCNINAFPICECLEGFMPKSSNWSDGCVRKTHLNCLHGDGFLPYTNMKLPDTSTSWFDKSMTLKECKTMCLKNCSCTAYTNLDVRDGSGCLLWFDYIVDMRIHPDQGQEIYIRLASSELDHSKNKRNFKRAGILAGVITLVIGLTVFVLLTSVYRKKLGYIKNYLTGRQGGFGPVYKGIMVDGQEIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLAKLIGCSIQQDEKLLIYEFLPNRSLDYFIFDTTRSKLLDWTKRLEIINGIARGLLYLHQDSTLRIIHRDVKISNILLDIDMIPKISDFGLARSFMGDQAEANTNTVTGTHGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNSGFCDPRHRLDLLGHAWRLWIDGRPEELIADILYDEGICSEIIRFIHVGLLCVQQQPENRPNMSSVVFMLKGEKLLPEPSEPGFYAGRNHTNSTEFSINEATISLLEAR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00420 769 Gene3D Transferase(Phosphotransferase) domain 1 535 736 - -
Trre5g00420 769 SUPERFAMILY Protein kinase-like (PK-like) 467 730 IPR011009 -
Trre5g00420 769 Pfam D-mannose binding lectin 74 177 IPR001480 -
Trre5g00420 769 SMART serkin_6 462 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00420 769 Pfam PAN-like domain 333 398 IPR003609 -
Trre5g00420 769 CDD STKc_IRAK 467 732 - -
Trre5g00420 769 CDD PAN_AP_plant 329 413 - -
Trre5g00420 769 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Trre5g00420 769 Gene3D Phosphorylase Kinase; domain 1 453 534 - -
Trre5g00420 769 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 332 412 - -
Trre5g00420 769 PIRSF SRK 464 769 IPR024171 GO:0004674
Trre5g00420 769 PIRSF SRK 2 464 IPR024171 GO:0004674
Trre5g00420 769 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 721 - -
Trre5g00420 769 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 148 - -
Trre5g00420 769 SMART ntp_6 334 412 IPR003609 -
Trre5g00420 769 Gene3D Hepatocyte Growth Factor 330 415 - -
Trre5g00420 769 Gene3D - 22 148 IPR036426 -
Trre5g00420 769 CDD B_lectin 27 151 IPR001480 -
Trre5g00420 769 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 182 IPR036426 -
Trre5g00420 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Trre5g00420 769 SMART blect_4 32 151 IPR001480 -
Trre5g00420 769 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 535 738 - -
Trre5g00420 769 ProSiteProfiles Protein kinase domain profile. 459 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00420 769 Pfam Protein tyrosine and serine/threonine kinase 467 727 IPR001245 GO:0004672|GO:0006468
Trre5g00420 769 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Trre5g00420 769 FunFam Uncharacterized protein 471 534 - -
Trre5g00420 769 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00420 Trre-Chr5 2649001 2652749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00420 467 744 Receptor kinase-like Gene Family AT4G23230 58.781 1.12e-110 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00420 PK_Tyr_Ser-Thr 7.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00420 - - tpra:123915365 1258.05