Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre5g00418 | ATGCAAACATACGAGGTTCTCATGCTAATGCTTCATTTCATTCCAACTTTATGTATACAATATGAAACTTTTTCTACTATTACACCAAATCATTCTATCCAAGGTAATCAAACTTTAGTGTCTTCAGCTGGAACTTTTGAAGCTGGATTCTTCAACTTTGCAAATTCACAACTTCAATATTTTGGTATATGGTACAAAACAATATCACCAAGAATCTATGTTTGGATTGCCAATAGAGATTCTCCAATACAAAACTCAACACCAATTCTAAAACTAACATATCCAGGTACTCTTACTATTGTTCATGATTCTAGTTCTAGAACCATTATATGGTCCTCAAATGCATCAACAATTGCGGCGAAACCGGTCTTGTCGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAGAATTCTGTGGGAGAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTCAGGACAAATTTACTAAATGGTCCTTATATGTCTCTTACATCTTGGAAAAGTGTTGAAGATCCTTCTTTAGGTGAGTTTTCCTATCATATAGATTTTCACGGATTTCCTCAATTAGTTACTACAAAGGGAGAAAATTTATATAGTAGGGGAGGAGCATGGAATGGTTATGCTTTTGGTGGAGTTTCATGGCTAAGGAATCTTAAGTTGTTCAATTTTTCTCTAGTTTTCACTGATAAAGAAGTTTCTTATGAGTATGAAACATTGAAAAAAGAAACTATTACTAGATTATGGCTTAGTCCATCAGGTTCTTCGCAGAGATTGGTATGGTCAGAGAGGAGAAAAGATTGGGATACTATATCGACTCGGCCGATGGATTCGTGTGCATATTATTCAATTTGTGGTGCTAATTCTATCTGCAATATCACAAACTCTCCAAGAATATGTAAATGCTTGGAAGGTTTTTTACCAAAGTATTATGAAAAGTGGAATTCTTTGGATTGGTCTGGTGGATGTGTTAGAAGTATAAGGTTAAATTGTATTGGAGATGAATTTCTAAAGCACTCAGGAGTAGAGTTGCCAGATACATCCTCTTCATGGTTTAACAAGAGCTTGAGCCTTGAGGAATGTGAGAAAATGTGTTTGAAAAATTGCTCTTGTACAGCATATGCAAGTTTAGATATTAAAAGTAATAGTGGCTGTTTGCTTTGGTTTGGCAAGATATGGGACTTGACAAAACATATAGACCAAGGACAAGATATTTTCATAAGACTGGCAGCCTCAGAGTTAGATCATAGACGAAATAGGTGGAGCATTAACAACAAGAAGCTTGCAGTGGCACTAGTAGGAATCATTTTATTCATCATGATTCTTGGACTAGCCACATTTACATATATAAAGAGAAAGAAGCTTGCAAAACCAGGGATGCTAAAAATATTTCATAGGAAGCACAAAAGAGAGAGGGAAGATGTGCAATTATCAACAATATTTGGTTTTTCAACCATATCTAATGCCACAAATCGCTTTTCAGACGATAACAAGATAGGACAAGGTGGTTTTGGACCGGTATACAAGGGCATATTGGAAGATGGACTAGAGATTGCAGTCAAGAGGCTATCAAAAACATCAGAACAAGGAGAAGAGCAGTTTAAAAATGAAGTCATGTTGATGGCGAAGCTTCAGCACCGCAATCTTGTTAAACTTCTTGGTTGTTCAATTTACCAAAATGAAAAGCTCCTGATCTATGAATTGATGCCAAACAGAAGCTTGGATTATTTCATTTTTGATTTGACACGAAAGAAACAGCTAGATCTGATAAAACGGTTCCAAATCATTGATGGGATTGCTCGAGATTTTGGTATGGCTAGAACATTCAGAGGAGATCAAGATAAGTCTAACACAAAAAGATTGATGGGAACATATGGTTATATGCCACCTGAATATGCGGTGCATGGATGTTTTTCAATCAAATCTGACGTTTTTAGCTTTGGCGTAATTGTTCTTGAGATAATTAGTGGGAGAAGGATTCGAAATTTTTATGACCAACATCATCATCTTAATCTTCTTGGTCATGCATGGAAACTGTGGAATGAAGAAAAGGCACAAGAGCTAATAGATGACATATTCCATGGTACAATCATTCCATGTGAAATATTGAGATGTATTCATGTTGGTCTACTATGTGTTCAACAAATACCAGAACATAGACCAAACATGTCATCTGTGGTCTTAATGTTGAATGGTGAAAAACTGTTGCCTGATCCTAGCCAACCTGGGTTCTATACTTCAACAGCTCATCTTCCAATTCAAGTAGAAACTTCTTCAAGAAGTTGTGGAGATTGTTCACAAAATGAAGCTTCTGTCTCATTGTTAGAGGCACGGTAG | 2355 | 0.3635 | MQTYEVLMLMLHFIPTLCIQYETFSTITPNHSIQGNQTLVSSAGTFEAGFFNFANSQLQYFGIWYKTISPRIYVWIANRDSPIQNSTPILKLTYPGTLTIVHDSSSRTIIWSSNASTIAAKPVLSLLDSGNLVVKDGERILWESFDYPGDTFLAGMKLRTNLLNGPYMSLTSWKSVEDPSLGEFSYHIDFHGFPQLVTTKGENLYSRGGAWNGYAFGGVSWLRNLKLFNFSLVFTDKEVSYEYETLKKETITRLWLSPSGSSQRLVWSERRKDWDTISTRPMDSCAYYSICGANSICNITNSPRICKCLEGFLPKYYEKWNSLDWSGGCVRSIRLNCIGDEFLKHSGVELPDTSSSWFNKSLSLEECEKMCLKNCSCTAYASLDIKSNSGCLLWFGKIWDLTKHIDQGQDIFIRLAASELDHRRNRWSINNKKLAVALVGIILFIMILGLATFTYIKRKKLAKPGMLKIFHRKHKREREDVQLSTIFGFSTISNATNRFSDDNKIGQGGFGPVYKGILEDGLEIAVKRLSKTSEQGEEQFKNEVMLMAKLQHRNLVKLLGCSIYQNEKLLIYELMPNRSLDYFIFDLTRKKQLDLIKRFQIIDGIARDFGMARTFRGDQDKSNTKRLMGTYGYMPPEYAVHGCFSIKSDVFSFGVIVLEIISGRRIRNFYDQHHHLNLLGHAWKLWNEEKAQELIDDIFHGTIIPCEILRCIHVGLLCVQQIPEHRPNMSSVVLMLNGEKLLPDPSQPGFYTSTAHLPIQVETSSRSCGDCSQNEASVSLLEAR | 784 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre5g00418 | 784 | Pfam | PAN-like domain | 339 | 400 | IPR003609 | - | |
| Trre5g00418 | 784 | Pfam | S-locus glycoprotein domain | 207 | 315 | IPR000858 | GO:0048544 | |
| Trre5g00418 | 784 | CDD | B_lectin | 30 | 148 | IPR001480 | - | |
| Trre5g00418 | 784 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase B120 | 615 | 741 | - | - | |
| Trre5g00418 | 784 | Gene3D | - | 19 | 145 | IPR036426 | - | |
| Trre5g00418 | 784 | ProSiteProfiles | Bulb-type lectin domain profile. | 24 | 147 | IPR001480 | - | |
| Trre5g00418 | 784 | Pfam | Protein tyrosine and serine/threonine kinase | 502 | 606 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre5g00418 | 784 | Pfam | Protein tyrosine and serine/threonine kinase | 608 | 733 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre5g00418 | 784 | CDD | TM_EGFR-like | 434 | 463 | - | - | |
| Trre5g00418 | 784 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 73 | 178 | IPR036426 | - | |
| Trre5g00418 | 784 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 463 | 574 | - | - | |
| Trre5g00418 | 784 | SMART | ntp_6 | 337 | 415 | IPR003609 | - | |
| Trre5g00418 | 784 | Gene3D | Hepatocyte Growth Factor | 337 | 413 | - | - | |
| Trre5g00418 | 784 | SMART | blect_4 | 30 | 148 | IPR001480 | - | |
| Trre5g00418 | 784 | ProSiteProfiles | PAN/Apple domain profile. | 337 | 416 | IPR003609 | - | |
| Trre5g00418 | 784 | ProSiteProfiles | Protein kinase domain profile. | 499 | 742 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre5g00418 | 784 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 11 | 727 | - | - | |
| Trre5g00418 | 784 | SUPERFAMILY | Protein kinase-like (PK-like) | 484 | 752 | IPR011009 | - | |
| Trre5g00418 | 784 | CDD | PAN_AP_plant | 335 | 416 | - | - | |
| Trre5g00418 | 784 | Gene3D | Phosphorylase Kinase; domain 1 | 465 | 574 | - | - | |
| Trre5g00418 | 784 | Pfam | D-mannose binding lectin | 73 | 174 | IPR001480 | - | |
| Trre5g00418 | 784 | Gene3D | Transferase(Phosphotransferase) domain 1 | 607 | 742 | - | - | |
| Trre5g00418 | 784 | PIRSF | SRK | 1 | 607 | IPR024171 | GO:0004674 | |
| Trre5g00418 | 784 | PIRSF | SRK | 608 | 784 | IPR024171 | GO:0004674 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre5g00418 | Trre-Chr5 | 2640865 | 2644205 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre5g00418 | 430 | 750 | Receptor kinase-like Gene Family | AT4G23230 | 44.818 | 2.15e-96 | 311 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Trre5g00418 | PK_Tyr_Ser-Thr | 1.2e-10 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre5g00418 | - | - | tpra:123913214 | 1324.69 |