Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00417 ATGCAAACATACGAGGTTCTCATGCTAATGCTTCATTTCATTCCAACTTTATGTATACAATATGAAACTTTTTCTACTATTACACCAAATCATTCTATCCAAGGTAATCAAACTTTAGTGTCTTCAGCTGGAACTTTTGAAGCTGGATTCTTCAACTTTGCAAATTCACAACTTCAATATTTTGGTATATGGTACAAAACAATATCACCAAGAATCTATGTTTGGATTGCCAATAGAGATTCTCCAATACAAAACTCAACACCAATTCTAAAACTAACATATCCAGGTACTCTTACTATTGTTCATGATTCTAGTTCTAGAACCATTATATGGTCCTCAAATGCATCAACAATTGCGGCGAAACCGGTCTTGTCGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAGAATTCTGTGGGAGAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTCAGGACAAATTTACTAAATGGTCCTTATATGTCTCTTACATCTTGGAAAAGTGTTGAAGATCCTTCTTTAGGTGAGTTTTCCTATCATATAGATTTTCACGGATTTCCTCAATTAGTTACTACAAAGGGAGAAAATTTATATAGTAGGGGAGGAGCATGGAATGGTTATGCTTTTGGTGGAGTTTCATGGCTAAGGAATCTTAAGTTGTTCAATTTTTCTCTAGTTTTCACTGATAAAGAAGTTTCTTATGAGTATGAAACATTGAAAAAAGAAACTATTACTAGATTATGGCTTAGTCCATCAGGTTCTTCGCAGAGATTGGTATGGTCAGAGAGGAGAAAAGATTGGGATACTATATCGACTCGGCCGATGGATTCGTGTGCATATTATTCAATTTGTGGTGCTAATTCTATCTGCAATATCACAAACTCTCCAAGAATATGTAAATGCTTGGAAGGTTTTTTACCAAAGTATTATGAAAAGTGGAATTCTTTGGATTGGTCTGGTGGATGTGTTAGAAGTATAAGGTTAAATTGTATTGGAGATGAATTTCTAAAGCACTCAGGAGTAGAGTTGCCAGATACATCCTCTTCATGGTTTAACAAGAGCTTGAGCCTTGAGGAATGTGAGAAAATGTGTTTGAAAAATTGCTCTTGTACAGCATATGCAAGTTTAGATATTAAAAGTAATAGTGGCTGTTTGCTTTGGTTTGGCAAGATATGGGACTTGACAAAACATATAGACCAAGGACAAGATATTTTCATAAGACTGGCAGCCTCAGAGTTAGATCATAGACGAAATAGGTGGAGCATTAACAACAAGAAGCTTGCAGTGGCACTAGTAGGAATCATTTTATTCATCATGATTCTTGGACTAGCCACATTTACATATATAAAGAGAAAGAAGCTTGCAAAACCAGACGATAACAAGATAGGACAAGGTGGTTTTGGACCGGTATACAAGGGCATATTGGAAGATGGACTAGAGATTGCAGTCAAGAGGCTATCAAAAACATCAGAACAAGGAGAAGAGCAGTTTAAAAATGAAGTCATGTTGATGGCGAAGCTTCAGCACCGCAATCTTGTTAAACTTCTTGGTTGTTCAATTTACCAAAATGAAAAGCTCCTGATCTATGAATTGATGCCAAACAGAAGCTTGGATTATTTCATTTTTGATTTGACACGAAAGAAACAGCTAGATCTGATAAAACGGTTCCAAATCATTGATGGGATTGCTCGAGATTTTGGTATGGCTAGAACATTCAGAGGAGATCAAGATAAGTCTAACACAAAAAGATTGATGGGAACATATGGTTATATGCCACCTGAATATGCGGTGCATGGATGTTTTTCAATCAAATCTGACGTTTTTAGCTTTGGCGTAATTGTTCTTGAGATAATTAGTGGGAGAAGGATTCGAAATTTTTATGACCAACATCATCATCTTAATCTTCTTGGTCATGCATGGAAACTGTGGAATGAAGAAAAGGCACAAGAGCTAATAGATGACATATTCCATGGTACAATCATTCCATGTGAAATATTGAGATGTATTCATGTTGGTCTACTATGTGTTCAACAAATACCAGAACATAGACCAAACATGTCATCTGTGGTCTTAATGTTGAATGGTGAAAAACTGTTGCCTGATCCTAGCCAACCTGGGTTCTATACTTCAACAGCTCATCTTCCAATTCAAGTAGAAACTTCTTCAAGAAGTTGTGGAGATTGTTCACAAAATGAAGCTTCTGTCTCATTGTTAGAGGCACGGTAG 2247 0.3645 MQTYEVLMLMLHFIPTLCIQYETFSTITPNHSIQGNQTLVSSAGTFEAGFFNFANSQLQYFGIWYKTISPRIYVWIANRDSPIQNSTPILKLTYPGTLTIVHDSSSRTIIWSSNASTIAAKPVLSLLDSGNLVVKDGERILWESFDYPGDTFLAGMKLRTNLLNGPYMSLTSWKSVEDPSLGEFSYHIDFHGFPQLVTTKGENLYSRGGAWNGYAFGGVSWLRNLKLFNFSLVFTDKEVSYEYETLKKETITRLWLSPSGSSQRLVWSERRKDWDTISTRPMDSCAYYSICGANSICNITNSPRICKCLEGFLPKYYEKWNSLDWSGGCVRSIRLNCIGDEFLKHSGVELPDTSSSWFNKSLSLEECEKMCLKNCSCTAYASLDIKSNSGCLLWFGKIWDLTKHIDQGQDIFIRLAASELDHRRNRWSINNKKLAVALVGIILFIMILGLATFTYIKRKKLAKPDDNKIGQGGFGPVYKGILEDGLEIAVKRLSKTSEQGEEQFKNEVMLMAKLQHRNLVKLLGCSIYQNEKLLIYELMPNRSLDYFIFDLTRKKQLDLIKRFQIIDGIARDFGMARTFRGDQDKSNTKRLMGTYGYMPPEYAVHGCFSIKSDVFSFGVIVLEIISGRRIRNFYDQHHHLNLLGHAWKLWNEEKAQELIDDIFHGTIIPCEILRCIHVGLLCVQQIPEHRPNMSSVVLMLNGEKLLPDPSQPGFYTSTAHLPIQVETSSRSCGDCSQNEASVSLLEAR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00417 748 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 178 IPR036426 -
Trre5g00417 748 Pfam PAN-like domain 339 400 IPR003609 -
Trre5g00417 748 CDD B_lectin 30 148 IPR001480 -
Trre5g00417 748 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Trre5g00417 748 Gene3D Hepatocyte Growth Factor 337 413 - -
Trre5g00417 748 Pfam D-mannose binding lectin 73 174 IPR001480 -
Trre5g00417 748 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Trre5g00417 748 CDD TM_EGFR-like 434 463 - -
Trre5g00417 748 Gene3D - 19 145 IPR036426 -
Trre5g00417 748 SMART ntp_6 337 415 IPR003609 -
Trre5g00417 748 SUPERFAMILY Protein kinase-like (PK-like) 467 716 IPR011009 -
Trre5g00417 748 SMART blect_4 30 148 IPR001480 -
Trre5g00417 748 ProSiteProfiles PAN/Apple domain profile. 337 416 IPR003609 -
Trre5g00417 748 Gene3D Transferase(Phosphotransferase) domain 1 451 573 - -
Trre5g00417 748 Gene3D Transferase(Phosphotransferase) domain 1 574 706 - -
Trre5g00417 748 Pfam Protein tyrosine and serine/threonine kinase 467 570 IPR001245 GO:0004672|GO:0006468
Trre5g00417 748 Pfam Protein tyrosine and serine/threonine kinase 572 697 IPR001245 GO:0004672|GO:0006468
Trre5g00417 748 CDD PAN_AP_plant 335 416 - -
Trre5g00417 748 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 691 - -
Trre5g00417 748 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 579 705 - -
Trre5g00417 748 ProSiteProfiles Protein kinase domain profile. 463 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00417 748 PIRSF SRK 462 571 IPR024171 GO:0004674
Trre5g00417 748 PIRSF SRK 572 748 IPR024171 GO:0004674
Trre5g00417 748 PIRSF SRK 1 467 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00417 Trre-Chr5 2640865 2644205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00417 430 714 Receptor kinase-like Gene Family AT4G23230 43.714 7.90e-90 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00417 PK_Tyr_Ser-Thr 1.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00417 - - gmx:100803275 1059.67