Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00416 ATGCAAACATACAAGGTTCTTCTCATGCTAATGCTTCAACTCATTCCAACTTTATGTATACAATATGAAACTTTTTCTACAATTACACCAAATCACTCTATCCAAGTTAATCAAACTTTAGTGTCTTCAGCTGGAACTTTTGAAGCTGGATTCTTCAGCCTTGCAAATTCACAACTTCAATATTTTGGTATATGGTACAAAACAATATCACCTAGAATCTATGTTTGGATTGCAAATAGAGATTCTCCAATACAAAACTCAACACCAATTCTAAAACTTACATATCAAGGTACTCTTACTATTGTTGATGATTCCAGAACCATTATATGGTCCTCCAATGCATCAACAATTGCGGTAAAACCGGTCTTGTCGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAAAAAGAATTATGTGGGAGAGTTTTGATTACCCTGGTGACACTTTGCTTCCAGGAATGAAACTCAAGACAAATTTACTAAATGGTCCTTATAGGTCTCTTACATCTTGGAAAAGTGTTGATGATCCTTCTTTAGGCGTGTTTTCTTATCAGATATATTTTCATGGATTTCCTCAATTAGTTATTACAAAGGGAGGAAATATGTATAGTAGGGGAGTAGCTTTGAATAAGGGTAATAATAATAGTCGACTTTCATTGCTAAGGAATCTTAAGTTGGTCAAATTTTCTATAATGTTAAATGATAAAGAAGTTTCTTATGAGTATGAAACTTTGAAAAATGAAACTATTACTAGATTTTGGCTTAATCCATCAGGTTATTCACAGAGATTGGTATGGTCAGATAGTAGAAAAGATTGGGATATTATATCGACTCGTCCGTTGGATCTTTGTGCATATTATTCAAGCTGTGGTGATAATTCTATCTGCAATATTATAAACTCTCCAAGAATATGTGAATGCTTGGAAGGTTTTGTACCAAAGTATTATGAAAAGTGGAATTCTATAGATTGGTCTGGTGGATGTGTTAGAAGAGTTAAGTTAAATTGTAGTGGAGATGGATTTTTGAAGCATTTAAGAGTTGAGTGGCCAGATACATCCTCTTCATGGTTATACAAGAGTTTGAATCTTGAAGAATGTGAGAAAAAATGTTTGAAAAATTGTTCTTGTTCAGCATATGCAATTTTAGATGTTAAAAGTAATAGTGGATGTTTGCTTTGGTTTGGAAATATAAGGGACTTGAAAACATATACAGACCAAGGACAAGATATTTTCATCAGACTTGCAGCTTCAGAGTTAGATCATGGAAGAAATAGGAGGAGCTTTAACAAAATGAAGCTTGCAGGGGCACTGGTAGCAGTCATTTTATTCATCATAGTTCTTGGACTAGCTACATTTGCATATATAAAGAGAAAGAAGCTTGCAAAACCAGGTGAATTTAAAATAGGACAAGGTGGTTTTGGACCGGTATACAAGGGCATATTGGAAGATGGACTAGAGATTGCAGTGAAGAGGCTATCAGAAAAATCAGCACAAGGAGAAGAACAGTTCAAAAATGAAGTCATGCTGATGGCGAAGCTTCAGCATCGCAATCTTGTAAAACTTCTTGGTTGTTCAATATACCAAAAGGAAAAGCTCTTGATCTATGAATTGATGCCCAACAGAAGCTTGAATTATTTCATTTTTGATTCAACGCGAAAGAAACTGCTAGATTTGATCAAACGGTTCCAAATTATTGATGGGATTGCTCGAGAACTTAGACCAAACATGTCATCTGTGGTCTTAATGTTGAATAGTGAAAAACTGTTGCCCGAGCCTAGCCAACCTGGGTTCTATACAGAAACAGCTCATCATCCAATTCAGGTAGAATCTTCTCCAAGAAGTTGTGAAGATTGTTCACAAAATGAAGCTTCTATGTCAATGTTAGAGGCACGGTAG 1899 0.3518 MQTYKVLLMLMLQLIPTLCIQYETFSTITPNHSIQVNQTLVSSAGTFEAGFFSLANSQLQYFGIWYKTISPRIYVWIANRDSPIQNSTPILKLTYQGTLTIVDDSRTIIWSSNASTIAVKPVLSLLDSGNLVVKDGKRIMWESFDYPGDTLLPGMKLKTNLLNGPYRSLTSWKSVDDPSLGVFSYQIYFHGFPQLVITKGGNMYSRGVALNKGNNNSRLSLLRNLKLVKFSIMLNDKEVSYEYETLKNETITRFWLNPSGYSQRLVWSDSRKDWDIISTRPLDLCAYYSSCGDNSICNIINSPRICECLEGFVPKYYEKWNSIDWSGGCVRRVKLNCSGDGFLKHLRVEWPDTSSSWLYKSLNLEECEKKCLKNCSCSAYAILDVKSNSGCLLWFGNIRDLKTYTDQGQDIFIRLAASELDHGRNRRSFNKMKLAGALVAVILFIIVLGLATFAYIKRKKLAKPGEFKIGQGGFGPVYKGILEDGLEIAVKRLSEKSAQGEEQFKNEVMLMAKLQHRNLVKLLGCSIYQKEKLLIYELMPNRSLNYFIFDSTRKKLLDLIKRFQIIDGIARELRPNMSSVVLMLNSEKLLPEPSQPGFYTETAHHPIQVESSPRSCEDCSQNEASMSMLEAR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00416 632 ProSiteProfiles Protein kinase domain profile. 463 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00416 632 CDD B_lectin 31 147 IPR001480 -
Trre5g00416 632 CDD PAN_AP_plant 333 416 - -
Trre5g00416 632 Pfam S-locus glycoprotein domain 226 315 IPR000858 GO:0048544
Trre5g00416 632 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 566 - -
Trre5g00416 632 SUPERFAMILY Protein kinase-like (PK-like) 468 571 IPR011009 -
Trre5g00416 632 Gene3D - 20 144 IPR036426 -
Trre5g00416 632 MobiDBLite consensus disorder prediction 609 632 - -
Trre5g00416 632 SMART ntp_6 337 415 IPR003609 -
Trre5g00416 632 SMART blect_4 31 147 IPR001480 -
Trre5g00416 632 SMART tyrkin_6 468 629 IPR020635 GO:0004713|GO:0006468
Trre5g00416 632 Pfam PAN-like domain 337 400 IPR003609 -
Trre5g00416 632 Pfam D-mannose binding lectin 74 173 IPR001480 -
Trre5g00416 632 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Trre5g00416 632 Gene3D Transferase(Phosphotransferase) domain 1 454 575 - -
Trre5g00416 632 Pfam Protein tyrosine and serine/threonine kinase 468 570 IPR001245 GO:0004672|GO:0006468
Trre5g00416 632 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 178 IPR036426 -
Trre5g00416 632 ProSiteProfiles PAN/Apple domain profile. 337 416 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00416 Trre-Chr5 2634641 2638098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00416 468 571 Receptor kinase-like Gene Family AT3G45860 61.538 1.62e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00416 PK_Tyr_Ser-Thr 3.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00416 - - gmx:100803275 714.531