Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00415 ATGCAAACATACAAGGTTCTTCTCATGCTAATGCTTCAACTCATTCCAACTTTATGTATACAATATGAAACTTTTTCTACAATTACACCAAATCACTCTATCCAAGTTAATCAAACTTTAGTGTCTTCAGCTGGAACTTTTGAAGCTGGATTCTTCAGCCTTGCAAATTCACAACTTCAATATTTTGGTATATGGTACAAAACAATATCACCTAGAATCTATGTTTGGATTGCAAATAGAGATTCTCCAATACAAAACTCAACACCAATTCTAAAACTTACATATCAAGGTACTCTTACTATTGTTGATGATTCCAGAACCATTATATGGTCCTCCAATGCATCAACAATTGCGGTAAAACCGGTCTTGTCGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAAAAAGAATTATGTGGGAGAGTTTTGATTACCCTGGTGACACTTTGCTTCCAGGAATGAAACTCAAGACAAATTTACTAAATGGTCCTTATAGGTCTCTTACATCTTGGAAAAGTGTTGATGATCCTTCTTTAGGCGTGTTTTCTTATCAGATATATTTTCATGGATTTCCTCAATTAGTTATTACAAAGGGAGGAAATATGTATAGTAGGGGAGTAGCTTTGAATAAGGGTAATAATAATAGTCGACTTTCATTGCTAAGGAATCTTAAGTTGGTCAAATTTTCTATAATGTTAAATGATAAAGAAGTTTCTTATGAGTATGAAACTTTGAAAAATGAAACTATTACTAGATTTTGGCTTAATCCATCAGGTTATTCACAGAGATTGGTATGGTCAGATAGTAGAAAAGATTGGGATATTATATCGACTCGTCCGTTGGATCTTTGTGCATATTATTCAAGCTGTGGTGATAATTCTATCTGCAATATTATAAACTCTCCAAGAATATGTGAATGCTTGGAAGGTTTTGTACCAAAGTATTATGAAAAGTGGAATTCTATAGATTGGTCTGGTGGATGTGTTAGAAGAGTTAAGTTAAATTGTAGTGGAGATGGATTTTTGAAGCATTTAAGAGTTGAGTGGCCAGATACATCCTCTTCATGGTTATACAAGAGTTTGAATCTTGAAGAATGTGAGAAAAAATGTTTGAAAAATTGTTCTTGTTCAGCATATGCAATTTTAGATGTTAAAAGTAATAGTGGATGTTTGCTTTGGTTTGGAAATATAAGGGACTTGAAAACATATACAGACCAAGGACAAGATATTTTCATCAGACTTGCAGCTTCAGAGTTAGATCATGGAAGAAATAGGAGGAGCTTTAACAAAATGAAGCTTGCAGGGGCACTGGTAGCAGTCATTTTATTCATCATAGTTCTTGGACTAGCTACATTTGCATATATAAAGAGAAAGAAGCTTGCAAAACCAGGGATGCTAAAAATATTTTATAGGAAGCACAAAAGAGATAAGGAAGATGTGCAGTTATCAACAATATTTGATTTTTCAACCATATCTAATGCTACAAATCACTTTTCGGACGATAACAAGATAGGACAAGGTGGTTTTGGACCGGTATACAAGGGCATATTGGAAGATGGACTAGAGATTGCAGTGAAGAGGCTATCAGAAAAATCAGCACAAGGAGAAGAACAGTTCAAAAATGAAGTCATGCTGATGGCGAAGCTTCAGCATCGCAATCTTGTAAAACTTCTTGGTTGTTCAATATACCAAAAGGAAAAGCTCTTGATCTATGAATTGATGCCCAACAGAAGCTTGAATTATTTCATTTTTGATTCAACGCGAAAGAAACTGCTAGATTTGATCAAACGGTTCCAAATTATTGATGGGATTGCTCGAGAACTTAGACCAAACATGTCATCTGTGGTCTTAATGTTGAATAGTGAAAAACTGTTGCCCGAGCCTAGCCAACCTGGGTTCTATACAGAAACAGCTCATCATCCAATTCAGGTAGAATCTTCTCCAAGAAGTTGTGAAGATTGTTCACAAAATGAAGCTTCTATGTCAATGTTAGAGGCACGGTAG 2007 0.3503 MQTYKVLLMLMLQLIPTLCIQYETFSTITPNHSIQVNQTLVSSAGTFEAGFFSLANSQLQYFGIWYKTISPRIYVWIANRDSPIQNSTPILKLTYQGTLTIVDDSRTIIWSSNASTIAVKPVLSLLDSGNLVVKDGKRIMWESFDYPGDTLLPGMKLKTNLLNGPYRSLTSWKSVDDPSLGVFSYQIYFHGFPQLVITKGGNMYSRGVALNKGNNNSRLSLLRNLKLVKFSIMLNDKEVSYEYETLKNETITRFWLNPSGYSQRLVWSDSRKDWDIISTRPLDLCAYYSSCGDNSICNIINSPRICECLEGFVPKYYEKWNSIDWSGGCVRRVKLNCSGDGFLKHLRVEWPDTSSSWLYKSLNLEECEKKCLKNCSCSAYAILDVKSNSGCLLWFGNIRDLKTYTDQGQDIFIRLAASELDHGRNRRSFNKMKLAGALVAVILFIIVLGLATFAYIKRKKLAKPGMLKIFYRKHKRDKEDVQLSTIFDFSTISNATNHFSDDNKIGQGGFGPVYKGILEDGLEIAVKRLSEKSAQGEEQFKNEVMLMAKLQHRNLVKLLGCSIYQKEKLLIYELMPNRSLNYFIFDSTRKKLLDLIKRFQIIDGIARELRPNMSSVVLMLNSEKLLPEPSQPGFYTETAHHPIQVESSPRSCEDCSQNEASMSMLEAR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00415 668 CDD B_lectin 31 147 IPR001480 -
Trre5g00415 668 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 178 IPR036426 -
Trre5g00415 668 CDD PAN_AP_plant 333 416 - -
Trre5g00415 668 Pfam S-locus glycoprotein domain 226 315 IPR000858 GO:0048544
Trre5g00415 668 ProSiteProfiles Protein kinase domain profile. 499 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00415 668 Gene3D Phosphorylase Kinase; domain 1 466 574 - -
Trre5g00415 668 Pfam D-mannose binding lectin 74 173 IPR001480 -
Trre5g00415 668 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 602 - -
Trre5g00415 668 Gene3D - 20 144 IPR036426 -
Trre5g00415 668 SMART ntp_6 337 415 IPR003609 -
Trre5g00415 668 SMART blect_4 31 147 IPR001480 -
Trre5g00415 668 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Trre5g00415 668 MobiDBLite consensus disorder prediction 645 668 - -
Trre5g00415 668 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 574 - -
Trre5g00415 668 Pfam PAN-like domain 337 400 IPR003609 -
Trre5g00415 668 ProSiteProfiles PAN/Apple domain profile. 337 416 IPR003609 -
Trre5g00415 668 Pfam Protein tyrosine and serine/threonine kinase 502 606 IPR001245 GO:0004672|GO:0006468
Trre5g00415 668 SUPERFAMILY Protein kinase-like (PK-like) 482 607 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00415 Trre-Chr5 2634641 2638098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00415 427 609 Receptor kinase-like Gene Family AT4G23230 46.196 2.09e-44 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00415 PK_Tyr_Ser-Thr 1.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00415 - - tpra:123913214 909.827