Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00412 ATGGAAAAGAGGGAATATTCTGAAATGCTGTCAATGATGAAAGTTTTGACCGATGAGGTTGTTTCTTTTGCTAAAAATTCCGAAATTGAGGTAGAGGCTTTTTCTGAGTTTGGCATGTTGGTTGAGAAATTTCCACCAATCTTGAATGAATTGAGTGATAATAGCACTGTCTTGGACAAGCCATCAATTCGAAAATCGTTGGAATCTCTTGAGAATGAGTTACGGCGTGCTAAAACTTTAACGAAAAGCTCGAATTTGAGACACCCTATTAAGCAAATTGAGGACATGACACATGATATCGGTCGGTCATTGGGAGTTTTGCTTGTTGCAAGCCTTGAAGTTTCCATTGATTTTAGAGAAAAGATTGGTACATTGCAAAAACAGATGATGAATGCAAGGTTTGATGGCAGTTCAAGTATCACTTCAAGTCCAAAATCGGAGCTTTTCGCGAATGAAACGAGGACAGTTTGGGAAATAGAAGAGGAAATAGTTAATGTTCCCATTGATGATGTTATTTTGCAACTTAAGAATGGCAGCGATGATGAATTTGCAGTTTCACTTCTGAGACTAAAGGAGTTCATGAGAAGTGAAAAATTGGACGGCGGTTTGATTAATGAGGAAGGAATTATCGCCATTCTTTTCAAGCGTCTAGTTTCGTGTAAGGCAGACAATAGGTTATCCATAATTCAACTGCTAAGAAGTATTGCTTTTGAGAATGACGAGAAAAAGGAGAAAATGGTTGAGATTGAGTTTTTATCGGCAGTGGTGAAGTCTCTTACGAGGGATTCAGAAGAGAGGAGGGAAGCAGTCGGCCTGTTGCTAGACCTCTCTAATGTTTCAGCAGTTCGAAGGCGGATTGGAAGAATTCAAGGGTGTATCGTTATGTTGGTTGCTATCCTTAATGGAGATGACCCTGTTGCTTCACATGATGCAGCAAAGTTATTGGATATTTTGTCTAGTAATAACCAAAATGCACTTCATATGGCCGAAGCCGGCTACTTTAGGCCACTAGTTCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTCTCTAGGTTGGAACTCACTGATCACAGCAAACTTACCCTCGGAGAAGATGGAGCGGTCGAGCCCCTTGTCAAAATGTTTATCACTGGAAAGCTTGAATCCAAGTTATCATCGTTAAACGCACTACAAAATCTGTCTACCTTGACCGAGAACGTGCAACGTTTGATTCGATCAGGAATTACAGGATCTTTGCTACAACTTCTTTTCTCTGTAACATCAGTTCTCATGACTCTAAGAGAGCCTGCATCAGCTATTCTTGCAAGAATTGCTCAATCCGAATCCATTCTCGTAAACGAGGATGTTGCTCAACAGATGCTTTCACTTTTGAATCTTTCAAGCCCTATAATTCAAGGTCACCTATTAGAAGCTCTAAATAGCATGTCTTCTCATCTTGGTGCATCCAAAGTGAGGAGAAAAATGAAGGAAAAAGGTGCACTTCAACTTCTTTTACCTTTTCTTAAGGAAAGTAACACCAATATCAGATGTAAGGTCTTGAATTTGTTATGCACACTCTCTAAAGATATAACTGATGAGTTGACCGAATATCTTGATGAAACTCATCTTTTCAACATCGTTAATATTGTCTCATCATCCACATCAGAGAGCGAAAAAGCGGCTGCGGTTGGCATACTGAGTAATCTTCCAGCTAGCGATAAAAAAGTAACCGACATACTAAAGAGGGCAAATTTGCTACCGATTTTGATATCCATTTTGTATACTTGCAGTGCAAGTAAATCGCCACCAGCAAATAGCTTAACCGAGAATGCTTCCGGTGTTATAAACCGCTTCACGAATTCATCTGACAAGAAACTACAACTTGTTTCAGTACAACACGGGGTGATTCCTTTGCTCGTAAAATTGCTCTCAACAAGTTCACCAATCACAAAATCAAGGGCTGCAAACTCTTTAGCTCAATTATCACAAAATTCTCTTTCTCTTAGGAAATCTAGAAAGGCAAGGTGGTTATGTGTTCAACCTTCATCAAATGCATATTGCGAAGTTCATGACGGATACTGCTTTGTCAATAGCACATTTTGTTTGGTCAAAGCAGGCGCAGTTTCTCGACTTATAGAAATATTGGAAGATAAAGAAAAGGAAGTAGTTGAAGCTTCTCTTGTTGCGCTTTCGACTCTTTTGCAAGATGAAATTTGGGAAGGTGGTGTGAGTTTCATTGAGAAGTTATCAGGTGTGCAAGCTATTATAAAAAGTCTAGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAAAATATTTAAGGTTGAAGAACATAGAGTAAAATATGGTCAATATGCTCAAGTGGTTCTTATTGATTTGGCACAAAAAAGTGATTCTAGATTGAAGTCAGCAGTTGCAAAAGTATTAGCTGAGCTTGAGCTTTTGCAAGCTCAATCAAGTTACTTTTGA 2484 0.3913 MEKREYSEMLSMMKVLTDEVVSFAKNSEIEVEAFSEFGMLVEKFPPILNELSDNSTVLDKPSIRKSLESLENELRRAKTLTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQKQMMNARFDGSSSITSSPKSELFANETRTVWEIEEEIVNVPIDDVILQLKNGSDDEFAVSLLRLKEFMRSEKLDGGLINEEGIIAILFKRLVSCKADNRLSIIQLLRSIAFENDEKKEKMVEIEFLSAVVKSLTRDSEERREAVGLLLDLSNVSAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAVEPLVKMFITGKLESKLSSLNALQNLSTLTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKESNTNIRCKVLNLLCTLSKDITDELTEYLDETHLFNIVNIVSSSTSESEKAAAVGILSNLPASDKKVTDILKRANLLPILISILYTCSASKSPPANSLTENASGVINRFTNSSDKKLQLVSVQHGVIPLLVKLLSTSSPITKSRAANSLAQLSQNSLSLRKSRKARWLCVQPSSNAYCEVHDGYCFVNSTFCLVKAGAVSRLIEILEDKEKEVVEASLVALSTLLQDEIWEGGVSFIEKLSGVQAIIKSLEVGDAKVQEKALWMLEKIFKVEEHRVKYGQYAQVVLIDLAQKSDSRLKSAVAKVLAELELLQAQSSYF 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00412 827 Gene3D - 329 675 IPR011989 -
Trre5g00412 827 SUPERFAMILY ARM repeat 352 782 IPR016024 -
Trre5g00412 827 Coils Coil 60 87 - -
Trre5g00412 827 Gene3D - 175 328 IPR011989 -
Trre5g00412 827 SMART arm_5 321 361 IPR000225 GO:0005515
Trre5g00412 827 SMART arm_5 695 735 IPR000225 GO:0005515
Trre5g00412 827 SMART arm_5 362 402 IPR000225 GO:0005515
Trre5g00412 827 SMART arm_5 573 620 IPR000225 GO:0005515
Trre5g00412 827 SMART arm_5 623 663 IPR000225 GO:0005515
Trre5g00412 827 SMART arm_5 403 446 IPR000225 GO:0005515
Trre5g00412 827 SMART arm_5 488 528 IPR000225 GO:0005515
Trre5g00412 827 SMART arm_5 239 278 IPR000225 GO:0005515
Trre5g00412 827 SUPERFAMILY ARM repeat 168 425 IPR016024 -
Trre5g00412 827 Gene3D - 694 825 IPR011989 -
Trre5g00412 827 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 172 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00412 Trre-Chr5 2618248 2620909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00412 186 827 U-box Gene Family AT1G20780 27.474 8.23e-43 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00412 K08332 - gmx:100791453 1246.49