Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00408 ATGGCAGAGTTGGTTGCTGAGGCATTTCTTTCTTCCTTCTTTCAAGGGATTTTTGATAGGTTGGCTTCAAGTAATTTCACAGATTATTTTCGTAGAGTCAAACTTGACAAGTTGGTGGAAGAACTTGAGTCTACACTGGATTCTATCAACCAAGTGTTAGATGATGCAGAAATAAAGCAATACCAAATCCCAAACGTCAAGAAGTGGCTTGGTAATGTTAAACATGCTATGTATGAGGCTGATCAACTATTAGATGAGATTGCTACTGATGCACCACTAAAGAAATTGAAGGCTGAATCTCAACCTTCTACTAGCAATATTTTCAACTTCATTCCAACTTTTACTAATCCATTTGAATCCAGGATCAAAGAATTGACAAAGAGCCTAGATTCACTTGTTGAGCAGAAGGATAAACTGCAATTGAAAAATCAAACATATGCCGGCAATGCAGTTGGATTCAATTCGAAACCTTCAGGAATAGAAGAAACTACATGTTTGGTGGATGCATCTGGCATATATGGTAGAGATGCTGAAAAAGAAGAAATGATCAAAACTTTACTTTCTTCAGAGAATGGTAGCAGCAATCAGACGCCTATAATCAGCATAGTGGGTCTGGGTGGGATGGGCAAGACCACCTTTGCTAAGCTTGTGTACAATGACAACAAGATGAAGGAACATTTTGAACTTAAAGCCTGGGTCTATGTTTCAGAATCTTTTGATGTTGTTGGACTCACCAAAGAAATTCTCAAGACATTTAATTCTTCGACAGAGGGTGAATCTAATTTAAATCTACTCCAACTGCGGCTGCAAGAAACATTAACTGGCAAAAAGTATCTGCTTGTTTTGGACGATATTTGGAATGGAAATGAGGAGAGTTGGGAGCAGTTACTACTTCCCTTTAACCATGGATCTTCTGGAAGTAAGATTATTGTGACAACACGTGACAAGGAGATAACCTATGTCCTGAAATCCACCAAGTTATTTAATTTACAACAATTGAACAAAAACGATTGTTGGAGTTTATTTGTGACACATGCGTTTGATGGCAAAAATTTGGACGAATATCGACATCTTGAGCAAATTGGCATGAAAATAGTGGACAAGTGTGGAGGATTGCCTTTAGGTGTAAAAACACTGGGCCAACTCTTGCGAAGAAAATTCTCTGAACATGAATGGAGGAAGATATTAGAGACTGATATGTGGCGATTATCAGATGAGGACAACAACATTAACCCAATGTTGAGATTGAGTTACCACAATCTCCCTTCTATTCAGAAGCGTTGTTTTGCTTGTTGTGCTGTATTTCCCAAAGGTTATGACTTTGAGAAAGGTAAATTAATCAAGTTTTGGATGGCAGAAGGTTTGCTGAAGTGTTGCGGAACAGACAAAAGTGAAGAAGAGTTGGGTGATGAAATTTTCAGCGATGTTGAGTCAATTTCATTTTTCCAAAATAGTACATGGCGTGATGATGCATTTGTGATGCATGATCTTGTCAATGATTTAGCAAAATCAGTGTCAGGAGAATTTTGTATGCAAATAGAGGGTTGTAGGGTGGAAGGTATCCCTGAAAGAACACGTCACATCCAGTTGTCTCGTCAATTAAATAGTGGTGATAAATTACTAGAGCCAATTTTTGAACGTAAGGGACTGCGTAGTCTGTTACTAGACTACACGGGTATGTTGATAAGCAACAATGTGCAACGTGATCTGTTTTCAAGACTAACATGTTTGCGGATGTTATCATTTAGAGGTTGTGATCTCTCAAAGCTAGTTGATGAGATAGGCAATTTAAAACTTTTGCGTTATCTAGACCTTTCTCACACACGGATTAAAAGTTTACCTGATACCATTTGTATGTTGTATAATTTGCAATCACTCTTGTTGGAAGGATGTCAAAAATTGACAGAGCTCCCTTCAAATTTTTCCAAACTCATCAATTTACGCCATCTTGAACTCCCTTTTGATGATTTTGGTCACCCTTATATAAAAAAGATACCAAAGAATATAGGAAAGTTGAACAAACTACAGTCCTTGCCTTTCATTATTGTGGAAGAGCAGAACAGATTTGTTCTTAAGGAGTTGGAGAAACTAAACCATCTTCATGGAACAATTCATATTGAAGGACTGGGTAATGTCATTGATCCTGCAGATGCTGTGATGGCCAATTTGAAAGATAAGAAGTATTTAGAAGAATTATATATAGAGTTTTATGGCAGAAGAGAAGAAATGGAAGACTCAATAGTTGAAGTTGAAAGCAATGTGTCTGTGTTGGAGGCTCTTCAACCAAATAGCAACTTGAAGAGGCTCACTGTTAAAAACTACAATGGCAAGTGCTTTCCAAATTGGCTAAGGGGTTATCATTTACCCAACTTAGTAAAATTGGAGATAAGTAAATGCAACAAGTTGGAGGAATGGCTATGTCTTGAAGGGTTTCCTTTGCTGAAAGAGCTTTGTATAACAAAATGTCCCGAATTGAAAAGGGTTCCGTCTCAACACCTTCCTTCTTTACAAGAATTAGAGATACATGATTGCGACAAGTTGGAGGAATGTTTATGTCTTGAAGGATCTCCTTTACTTGTAAATGTTTCTATAGAATATTGTTCCAAATTGAAAAGGGCCCCCCTACCTCAACACCTTCCTTCTTTACAAAAATTGAAGATTTGTGTTTGCGAAATGATGGAGACATCAATTCCCAAGGGTGATAGTATGATAGAGTTAGATCTACAGAGATGTCATCAGATTTTGGTAAATGAATTGCCGACTGGCTTGAAAAAGTTTTCCCTTTGGCAAAATCGGTACACTGAGTTCTTTGAGGAGCAAAATTTAGTAAACTGTGCCTTTCTTGAACAGTTGGCGTTTGATTTAAGAGGCTTTGTTGTAAAACGTCCCTCTTTAGATCTTCGTTGCTATAATTCTCTTCGTTATCTTTCAATAAGAGGATGTGACTCCTCCTCCTCCTCCTTGCCTTTTTCACTACAACTCTTCACCAATCTTCAAGATCTTAGGTTGTACGATTGCCCACAGTTGGAATCATTTCCAAGGGGATGTCTGCCTTCCAACTTGATCTCCCTTAAAATACAGAATTGCCCAAAACAGATTGCTTCGAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTTTGAAAATACTCATAATTAGTGATCATGAGTTTGAAAACGTGGAGTCATTCCCAGAGGAGAATCTGCTGCCACGAACTCTTAAGTGGCTTGAAGTGAGAAATTGTTCAATGCTAAGAATATTGAACAACAAGGGTTTTCTCCGCCTCAATTCTCTCAAAAATCTAAATATTGACAACTGCCCTAGTCTTGAGAGCTTGCCAGAGGAGGGTCTACAACAACTCGGTTCCCTATTTCAATTGTCGATCAAGAATTGTCCATTAATTCGGGAGAAGTACAAAAAGGAGGGAGGAGAGCGTTGGCATACAATGAGTCACATCCCTTCTTTGTGGATTGACGGAGAGCGGCAACTGTGA 3492 0.3834 MAELVAEAFLSSFFQGIFDRLASSNFTDYFRRVKLDKLVEELESTLDSINQVLDDAEIKQYQIPNVKKWLGNVKHAMYEADQLLDEIATDAPLKKLKAESQPSTSNIFNFIPTFTNPFESRIKELTKSLDSLVEQKDKLQLKNQTYAGNAVGFNSKPSGIEETTCLVDASGIYGRDAEKEEMIKTLLSSENGSSNQTPIISIVGLGGMGKTTFAKLVYNDNKMKEHFELKAWVYVSESFDVVGLTKEILKTFNSSTEGESNLNLLQLRLQETLTGKKYLLVLDDIWNGNEESWEQLLLPFNHGSSGSKIIVTTRDKEITYVLKSTKLFNLQQLNKNDCWSLFVTHAFDGKNLDEYRHLEQIGMKIVDKCGGLPLGVKTLGQLLRRKFSEHEWRKILETDMWRLSDEDNNINPMLRLSYHNLPSIQKRCFACCAVFPKGYDFEKGKLIKFWMAEGLLKCCGTDKSEEELGDEIFSDVESISFFQNSTWRDDAFVMHDLVNDLAKSVSGEFCMQIEGCRVEGIPERTRHIQLSRQLNSGDKLLEPIFERKGLRSLLLDYTGMLISNNVQRDLFSRLTCLRMLSFRGCDLSKLVDEIGNLKLLRYLDLSHTRIKSLPDTICMLYNLQSLLLEGCQKLTELPSNFSKLINLRHLELPFDDFGHPYIKKIPKNIGKLNKLQSLPFIIVEEQNRFVLKELEKLNHLHGTIHIEGLGNVIDPADAVMANLKDKKYLEELYIEFYGRREEMEDSIVEVESNVSVLEALQPNSNLKRLTVKNYNGKCFPNWLRGYHLPNLVKLEISKCNKLEEWLCLEGFPLLKELCITKCPELKRVPSQHLPSLQELEIHDCDKLEECLCLEGSPLLVNVSIEYCSKLKRAPLPQHLPSLQKLKICVCEMMETSIPKGDSMIELDLQRCHQILVNELPTGLKKFSLWQNRYTEFFEEQNLVNCAFLEQLAFDLRGFVVKRPSLDLRCYNSLRYLSIRGCDSSSSSLPFSLQLFTNLQDLRLYDCPQLESFPRGCLPSNLISLKIQNCPKQIASREEWGLFQLNSLKILIISDHEFENVESFPEENLLPRTLKWLEVRNCSMLRILNNKGFLRLNSLKNLNIDNCPSLESLPEEGLQQLGSLFQLSIKNCPLIREKYKKEGGERWHTMSHIPSLWIDGERQL 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00408 1163 Coils Coil 32 59 - -
Trre5g00408 1163 Gene3D - 418 505 IPR036388 -
Trre5g00408 1163 Pfam NB-ARC domain 177 419 IPR002182 GO:0043531
Trre5g00408 1163 PANTHER DISEASE RESISTANCE PROTEIN RP 36 884 IPR044974 GO:0006952
Trre5g00408 1163 Coils Coil 740 760 - -
Trre5g00408 1163 ProSiteProfiles Leucine-rich repeat profile. 599 620 IPR001611 GO:0005515
Trre5g00408 1163 Gene3D Ribonuclease Inhibitor 533 920 IPR032675 -
Trre5g00408 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 432 IPR027417 -
Trre5g00408 1163 SUPERFAMILY RNI-like 831 1131 - -
Trre5g00408 1163 PRINTS Disease resistance protein signature 272 286 - -
Trre5g00408 1163 PRINTS Disease resistance protein signature 786 802 - -
Trre5g00408 1163 PRINTS Disease resistance protein signature 369 383 - -
Trre5g00408 1163 PRINTS Disease resistance protein signature 199 214 - -
Trre5g00408 1163 Gene3D - 332 417 IPR042197 -
Trre5g00408 1163 FunFam Probable disease resistance protein At1g61300 157 326 - -
Trre5g00408 1163 SUPERFAMILY L domain-like 493 894 - -
Trre5g00408 1163 Gene3D - 163 327 IPR027417 -
Trre5g00408 1163 Gene3D Ribonuclease Inhibitor 940 1141 IPR032675 -
Trre5g00408 1163 Pfam Rx N-terminal domain 9 98 IPR041118 -
Trre5g00408 1163 Coils Coil 122 142 - -
Trre5g00408 1163 Gene3D - 15 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00408 Trre-Chr5 2592750 2596241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00408 171 880 WRKY Transcription Factor Family AT5G45050 22.832 1.58e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00408 - - tpra:123913226 1657.5