Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00401 ATGGAGCAACAACGAACAGTGTTTCCTTCTTCCAAGGGAGTTTGTACTTATGATGTTTTCCTCAGTTTCAGAGGAGAAGATACTCGCTATGGTTTCACTGGAAATCTCTACAATGCTTTACACCAAAAAAGAATCAAAACTTTCATGGATGATGAAACGATTAAGAGAGGAGAACAAATTTCACCTACTATTTTCAAAGCAATTGATGAGTCTAGAATGGCTATAATTGTTTTCTCCAAAAACTATGCATCCTCAAAATACTGTCTTCAAGAACTTGCCAAAATCATTGGATGTTTCAAAGACAAGGAACTAGTGGTGTTTCCAGTGTTTTACAACGTTGATCCATCAGAGGTTCGAAATCAGACCGGGAATTATGGACAACAATTGGCTAAGCATGAGGAGAAAATGAAGGAAGAAGTGCAAGGTTGGAGGTTGGCTTTAGGTGAAGCTGCCAATCTGGCAGGGTGGTGTTTTAGAGATGATGGATACGAATATGAATATGAATTTATCAAAAGGATTGCTGACACGGTGTGCAGCACATCAAATCAGATCCTTTCACATGTTGATGATTATGCAGTTGGACTTGAGTCACGCGTATCTAAAATACTATACCGTTTGCAAATGCCTGATTCTAAGGTCGTCATTATAGGAATTTGTGGTGTTGGTGGAATAGGAAAAACTACTTTGGCACGAGCTGTGTATGATTCCATTGGCCAACAATTTGAAGGTCTGTGTTTTCTCAATGATGTCAGAGAAAATTCAACCAAATATGGATTGGCATATCTACAACAGGTAATTCTTTCTGATACAGTTGGCGAGAATATCAAGCTGCGTAATGAGAATGAAGGAATTTCTATCTTAATCAGAAATTTGCAAAGTAAAAGGATTCTTTTGATACTTGATGATGTTGACAAGTTGGACCAATTGAAGAATTTAGCAGGAGAACCCAGTTGGTTTGGTTGGGGGAGTAGAATTATCATAACTACTAGGCATAAAGATATTCTAACTTCTCATGGAGTTGGAAATATATATGATGTACCTTGTTTGAATTATTTTGAAGCTCTTCAACTTTTAAGTTCCATTGCATCAAAAAGTCTTAATCCTAAAGGAGTCTGGGAACGTGTTATCAGCTATTCCCACGGTATTCCATTGGTTTTAAAGGTTATAGGTTCTGATTTATTAGAAAACTCAACAGATGAAGGGGAGATTTCATTAGACAGATATGAAAAAGTCTGCAATGAAGAAACTCAGAGTATACTTGAAGTGAGTTACAATAGTTTGAATGAATGCGAGAAGAGAATTTTCATTGACATTGCGTGTTTCTTCACTGGAGAGCCGTTTTCATATGTCAAAGAAATACTATCTGCTTGTGGTATCTATACAAAATATGGTATTGACAGACTTAAGGATAGATCCCTCATATCAATCACTCCCGGTGGGAACTTGATGGTGCATGATCATATAATAGACATGGCTATGAATATAGTACACAAAGAATCACCATTGAATCCTTGCAAACGAAGTAGGTTATGGTTACCTGAGGATGTTCTTCAAGTTTTAGATGAAAATGCGGGAAATGGGAACACCGAAGTCATGATATTGGACTGCTTACCACAAGAAAACGTAGAGAAACTGAGTGACAAAGCCTTCAAAGAGATGAAAAGCCTGAGAATACTAATTATTAAGGACGCGGTATATTCAGAAGTCCTCCAAAATCTCCCTAATAGCTTAAGAGTTCTGGATTGGAGTGGATATCCTTCATGTTGTTTACCACCTGATTTTGTCAAGTTGCCTTCTAATTGTCTCATTTTCAACAAGTTCAAGGATATGAAGTCTTTGATTAGTATTGATTTCACCGACTGTATGTTTATAAGAGAAGTACCTGATATGTCCGGTGTCCCAAACTTGATGAAATTGTATCTTGATAATTGTATTAATGTCACTAAAATTCATGATTCTGTTGGATTCCTTGATAACCTTGAAGAGCTGACAGCCACAGGATGCACTAATCTAACAACAATCTCCGTTGCATTCAATTTGCCATATCTTAGAGTTCTCTCTTTCTCTGAGTGCTCGAAACTCACGAGGTTCCCAGAAATATTGTGCAAGATAAAAAATTTGCAACATGTCAACTTGTGGCAAACTGCCATAGAGGAATTACCAATTTCAATTGGAAATGTGACAGGACTCGAAGTTTTAACTCTGATGGATTGTACTAGTCTCGATAAGCTACCTAGTAGCATTTTTACACTACCAAGACTTCAAGAAATTCAAGCTGACTCATGTAAAGGGTTTGGCATTTCTGTCGAATTTGATGAAGATAATGGACCACTGAAATTCACTGTATCTCCAAACAAGATTCATCTGTATTTGAGCTCTTGCAAATTAACAGATGAACATCTTTTTATATGTCTCAGCGGTTTCGCCAATGTGGTGCATTTGGACATATCTTGCAGTAATTTCACTGTCCTTCCACTATGCATTAAAGAATGTATCCACTTGAACACTCTTCTGTTGACAAACTGCAATCAGCTTCAAGAAATCTCAGAAATTCCACCAAAATTGAGAGAAATAGATGCATTGAACTGCACATCATTGACATCCCAGTCACAGAGTGTACTATTAAGCCAGGAATTTCATGAAACTGGGGGAAAAACTGTAATGCTTCCAGGATCAAGTATACCAGAATGGTTTGATCATTGTAGCAGTGAAAGATCCATATCCTTTTATGCACGTGAGAGATTACCTAGTATTTGTGTGTCTGTTGTTTTTGGGGTGCTGGAAAATCTACCTCATCATTTTCTAGTTAGATTCTGTTTAATCATCAACGGCCACAAAACGATTCTATCACCATGTTCTAGTTTGTCAATTGTGAAGGAACATGTGTGGCTGTTTGATCTAAGATCCTTTATCAATAATCATAACCTTAGAATTTATTTTAAGGAACATGGTTGGAATCATGTGGAAGTTTCATGTGAGGATTGTGAAGATGAGCATTTAATGGCACAAGCTGTTCATGGATTGAGAAGAATGACAATTGTAAAATGGTATGGAATTCATGTGTACAGACAAGAAAACAGAATGGAGAATATCTTATTCACTAGTGACAAGACTCTACAAGAAAAATATACTGATTATGAAATATTTAATCAAGACAATTACCCCTTGTCTAAACGGCAGTGTAGATGA 3189 0.3685 MEQQRTVFPSSKGVCTYDVFLSFRGEDTRYGFTGNLYNALHQKRIKTFMDDETIKRGEQISPTIFKAIDESRMAIIVFSKNYASSKYCLQELAKIIGCFKDKELVVFPVFYNVDPSEVRNQTGNYGQQLAKHEEKMKEEVQGWRLALGEAANLAGWCFRDDGYEYEYEFIKRIADTVCSTSNQILSHVDDYAVGLESRVSKILYRLQMPDSKVVIIGICGVGGIGKTTLARAVYDSIGQQFEGLCFLNDVRENSTKYGLAYLQQVILSDTVGENIKLRNENEGISILIRNLQSKRILLILDDVDKLDQLKNLAGEPSWFGWGSRIIITTRHKDILTSHGVGNIYDVPCLNYFEALQLLSSIASKSLNPKGVWERVISYSHGIPLVLKVIGSDLLENSTDEGEISLDRYEKVCNEETQSILEVSYNSLNECEKRIFIDIACFFTGEPFSYVKEILSACGIYTKYGIDRLKDRSLISITPGGNLMVHDHIIDMAMNIVHKESPLNPCKRSRLWLPEDVLQVLDENAGNGNTEVMILDCLPQENVEKLSDKAFKEMKSLRILIIKDAVYSEVLQNLPNSLRVLDWSGYPSCCLPPDFVKLPSNCLIFNKFKDMKSLISIDFTDCMFIREVPDMSGVPNLMKLYLDNCINVTKIHDSVGFLDNLEELTATGCTNLTTISVAFNLPYLRVLSFSECSKLTRFPEILCKIKNLQHVNLWQTAIEELPISIGNVTGLEVLTLMDCTSLDKLPSSIFTLPRLQEIQADSCKGFGISVEFDEDNGPLKFTVSPNKIHLYLSSCKLTDEHLFICLSGFANVVHLDISCSNFTVLPLCIKECIHLNTLLLTNCNQLQEISEIPPKLREIDALNCTSLTSQSQSVLLSQEFHETGGKTVMLPGSSIPEWFDHCSSERSISFYARERLPSICVSVVFGVLENLPHHFLVRFCLIINGHKTILSPCSSLSIVKEHVWLFDLRSFINNHNLRIYFKEHGWNHVEVSCEDCEDEHLMAQAVHGLRRMTIVKWYGIHVYRQENRMENILFTSDKTLQEKYTDYEIFNQDNYPLSKRQCR 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00401 1062 SMART till_3 16 153 IPR000157 GO:0007165
Trre5g00401 1062 Gene3D - 180 340 IPR027417 -
Trre5g00401 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 784 IPR044974 GO:0006952
Trre5g00401 1062 ProSiteProfiles TIR domain profile. 15 177 IPR000157 GO:0007165
Trre5g00401 1062 Gene3D - 11 179 IPR035897 -
Trre5g00401 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Trre5g00401 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 156 IPR035897 -
Trre5g00401 1062 Gene3D Ribonuclease Inhibitor 776 882 IPR032675 -
Trre5g00401 1062 SMART AAA_5 212 349 IPR003593 GO:0016887
Trre5g00401 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 438 IPR027417 -
Trre5g00401 1062 Pfam TIR domain 17 183 IPR000157 GO:0007165
Trre5g00401 1062 Gene3D Ribonuclease Inhibitor 526 775 IPR032675 -
Trre5g00401 1062 Pfam NB-ARC domain 196 400 IPR002182 GO:0043531
Trre5g00401 1062 SUPERFAMILY "Winged helix" DNA-binding domain 416 520 IPR036390 -
Trre5g00401 1062 SUPERFAMILY L domain-like 539 874 - -
Trre5g00401 1062 PRINTS Disease resistance protein signature 215 230 - -
Trre5g00401 1062 PRINTS Disease resistance protein signature 290 304 - -
Trre5g00401 1062 PRINTS Disease resistance protein signature 678 694 - -
Trre5g00401 1062 PRINTS Disease resistance protein signature 379 393 - -
Trre5g00401 1062 Gene3D - 349 428 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00401 Trre-Chr5 2544464 2550339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00401 8 762 WRKY Transcription Factor Family AT4G12020 28.304 1.64e-62 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00401 - - gmx:100796191 1302.73