Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00398 ATGGCTGAGCCGGTTGCTGGTGCATTTCTTTCGTCTTTCTTTGAAGTGATTCTCGAGCGGTTGGCTTCATGTGATTTCCATGACTACTTCAACAGAAACAAACTTGATGGTGGATTTGTGGACAAACTTGGCATTACACTCAATTCTATAAATCAAGTTCTGGAAGAAGCAGAAAATATGCAGTACAAAAGCACATATGTAAAGAAATGGCTTGATGATCTTAAACATGCTGTATATGTGACAGACCAAATTTTCGATGAGATTGTTACTGATGCACAACTGAATAAGCGGAAAGCTGAATCTGATTCTGTTAACAGCTCAACATTTGAATCTAGGATCAAAGAACTAATAGAGATGCTAGAACTTCTTGTGAAGCAAAAGGAAATATTGGGATTGAAAGGAGCTGCTCGGTGTGCTAGTAATGAAGGGGTTGACATCAGCTGGAAATCGTTGAAAAAATTGCCAACTACAATGCCAGATGACAAAGCGAATCTACATGGTAGAGATGTTGAGAAAGAGGAAATAATCAATTTTTTACTTTCAGATAATGATGGTGGCAACCGGGTACCCGTACTCAGCATAATCGGTTTAAGTGGGATGGGTAAGACCACCCTTGCTGAGGTTGTGTATAATGATGATAGGATTAGGGACCATTTTGATCGTAAAGCTTGGGTCTATGTTTCAGAATATTTTGATGTTGTTCGACTTACCAAAGAAATAATTGGTAGGTTAGATCATTCTTTAGCAGACGGAAAGGACTTGAATCAACTCCAACAACAACTGCGTCAAAGAATAACAGGCAAGAAATATTTTCTTGTTCTAGACGATGTTCGGAATGGCAAAGATGAATGTTGGGAGCAGTTACTACTTCCCTTTAATCATGGATCTTTTGGAAGTAAGATTATTGTGACAACACGTGACAAAGAGGTAGCATCGGTAATGAAATCTGCTCAGATACTTCATTTGAAGCAACTGGAGGAAAGTGACTGTTGGAGTTTATTTGTGAGACATGCTTTTTACGGAAAAAATGTAAGCGAATATCCAAATCTTGAATCAATTGGAAGGAAAATTGTAGACAAGTGTGGAGGGTCGCCTTTAGCTGTAAGAACATTGGGGGGTCTCTTGCGGATGAAATTTTCTCCAGATGAATGGGTCAAGATATTGGAGACAGACATGTGGCTTTTATCAGATGAGGACAAGGACAACAACGTTAACATTTACCCGATATTGGCACTGATTTATCATAACCTTCCTTCCAATGTGAAGCGATGTTTTGCTTATTTTTCCACATTTCCCAAAGTTAATCGGTTTTACAAGGATCAATTAATCAAGCTTTGGATGGCAAATGGGTTGCTGAAGTGTTGTGGAACAGACAGCAATGAAGAAGATTTGGGTGGTGAATTCTTTGATTATCTTGAGTCAATTTCATTTATACAACAATCATTATATCCAGAGAAGGATAATAAGTACTACTTTATCATGCATGATCTTGTCATTGATTTAGCACGATCAGTGTCAGGAGAATTTTCTTTACGGATAGAAGGTGATAGGGTTCAAGATATCCCTGAAAGAACACGCCATATACGGTGCACTCTTGATTTGAAATATGGTGATCAAAAATTAGAGAAGATTTATAAGATTAAGGGTTTAGACAATCTGATGGTAGAAGAACAAGACTATGATGACCAATGCTTCAAGATATGCAAAAATGTGCAAATTGATCTATTTTCCAGTCTAAAATATTTGCGTATGTTAACATTCTCTTATTGTTATAATCTCTCGGAGCTAGCTGATGAGATAAGTAACTTAAAGCTTCTGCGTTATCTGGACCTTTCTTACACTGGGATTACAAGCATACCTGATTCCATTTGTATGCTGTACAATTTGCAGACACTCTTATTGCTAGGTTGTAAATTGACTGAGCTCCCTGCAGATTTTTACAAACTCGTCAATTTACGTCATCTTAATCTAGAAAGAACTCTTATCTCGAAGATGCCAAAGCAAATACAAACGTTAACCCATCTTCGGACGTTGACGGATTTTGTTGTGGGAGAGTATAGCGGGACTGATATTAAGGAGTTGGCAAAACTCAACCATCTTCGAGGGTCACTTTGTATTTTGAACTTGGAAAATGTCACCAATCTTGCAGATGCTGCGGAAGCAAATTTGAAAGATAAGATTCATTTGGAACAATTGCATATGAGGTATGGTTACAGAAGAAAAACGGATGGTTCAATTGTTGAGAGAAATGTCTTGGAGGTTCTCGAACCAAATAGCAACCTGAATAGGCTCATCATCGAGGACTATAGAGGCACTAGCTTTCCACGTTGGCTCGTGGAATGTTATTTACGCAATTTAGTATCCCTTGAACTGAATAGATGTGAATTTTGTTCCCAGTTTCCACCGCTTGGGCAGCTCCCGTCTCTTAAGGAGCTTGATATTTCAGAATGTGATGGAATAGAGATTATTGGTGAAGAGTTTTACGGCTATAATTCATCAATTATTCCATTCAGTTCCCTTGAAATTTTGAGATTTGGTAACATGTACGGTTGGAATGAATGGTTATGTCCTAAAGGCTTCCCTTCTCTTAAAGAACTTTTTATAACAGAATGTCCCAAGTTGAAAAGGGCGTTGCCTCAACATCTTCCTTGTTTGGAACGCTTGGTGATTCATGGATGCCCAGAGTTGGAGGCTTCGATTCCTGCTAATATCAAAGCGCTAGAGATAGCCGGATGTGTAAACCTTTTCATAAATGATTCACCATCCAGCTTAAAAAAGGCCTGTCTTGGCGGAACTCGGGTCATTGAATCCTCTCTAGAGAAAATTTTGTTCAATGGTGCCTCTCTTGAAAAGTTGGATTTTGGTAACTACGATGGTGCAAATCTTGAATGGTCTTCTTTTGATTTCCGAAGCTGTAATTCACTTCGCACTCTGTCCATAACAGGATGGTGCTCCTCGTCCTTGCCTTTTGCATTAAACTTGTTCACCGATCTTTGTTCTCTACATTTGTACGATTGCCCGCAGCTCAAATCGTTTCCACAAAGAAGTTTACCGTCCAGCCTGAGCACCCTCCGTATAAACAAATGCCCTAAACTGATTGCATCGAGAGATGAGTGGGGTTTGTTCGAACTCAATTCTCTGAAAGAATTCAGAATTAGTGATGACTTTGAAAACGTTGAGTCCTTCCCAGAGGAGAATCTACTGCCACCAACTCTTACCTCTCTCCGTTTGGAAAATTGTTCAAAGCTGAGAATAATAAATTACAAAGGTCTTCTCCATCTCAAATCTCTCAGACTCTTGGTCATTGAAAATTGCCCTCGTCTTGAACGCTTGCCAGAGAAGGATCTTCCGAACTCCCTTTCTACTTTGTACATTCGTGAGTGTCCATTACTTAAGCAGCGGTACCAAAAGGAGGAAGGAGAACATTGGCACAAAATTTGTCTCATCCCTGATGTATTTATTTATTGA 3468 0.391 MAEPVAGAFLSSFFEVILERLASCDFHDYFNRNKLDGGFVDKLGITLNSINQVLEEAENMQYKSTYVKKWLDDLKHAVYVTDQIFDEIVTDAQLNKRKAESDSVNSSTFESRIKELIEMLELLVKQKEILGLKGAARCASNEGVDISWKSLKKLPTTMPDDKANLHGRDVEKEEIINFLLSDNDGGNRVPVLSIIGLSGMGKTTLAEVVYNDDRIRDHFDRKAWVYVSEYFDVVRLTKEIIGRLDHSLADGKDLNQLQQQLRQRITGKKYFLVLDDVRNGKDECWEQLLLPFNHGSFGSKIIVTTRDKEVASVMKSAQILHLKQLEESDCWSLFVRHAFYGKNVSEYPNLESIGRKIVDKCGGSPLAVRTLGGLLRMKFSPDEWVKILETDMWLLSDEDKDNNVNIYPILALIYHNLPSNVKRCFAYFSTFPKVNRFYKDQLIKLWMANGLLKCCGTDSNEEDLGGEFFDYLESISFIQQSLYPEKDNKYYFIMHDLVIDLARSVSGEFSLRIEGDRVQDIPERTRHIRCTLDLKYGDQKLEKIYKIKGLDNLMVEEQDYDDQCFKICKNVQIDLFSSLKYLRMLTFSYCYNLSELADEISNLKLLRYLDLSYTGITSIPDSICMLYNLQTLLLLGCKLTELPADFYKLVNLRHLNLERTLISKMPKQIQTLTHLRTLTDFVVGEYSGTDIKELAKLNHLRGSLCILNLENVTNLADAAEANLKDKIHLEQLHMRYGYRRKTDGSIVERNVLEVLEPNSNLNRLIIEDYRGTSFPRWLVECYLRNLVSLELNRCEFCSQFPPLGQLPSLKELDISECDGIEIIGEEFYGYNSSIIPFSSLEILRFGNMYGWNEWLCPKGFPSLKELFITECPKLKRALPQHLPCLERLVIHGCPELEASIPANIKALEIAGCVNLFINDSPSSLKKACLGGTRVIESSLEKILFNGASLEKLDFGNYDGANLEWSSFDFRSCNSLRTLSITGWCSSSLPFALNLFTDLCSLHLYDCPQLKSFPQRSLPSSLSTLRINKCPKLIASRDEWGLFELNSLKEFRISDDFENVESFPEENLLPPTLTSLRLENCSKLRIINYKGLLHLKSLRLLVIENCPRLERLPEKDLPNSLSTLYIRECPLLKQRYQKEEGEHWHKICLIPDVFIY 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00398 1155 Gene3D - 414 505 IPR036388 -
Trre5g00398 1155 PRINTS Disease resistance protein signature 191 206 - -
Trre5g00398 1155 PRINTS Disease resistance protein signature 361 375 - -
Trre5g00398 1155 PRINTS Disease resistance protein signature 804 820 - -
Trre5g00398 1155 PRINTS Disease resistance protein signature 264 278 - -
Trre5g00398 1155 Gene3D - 324 413 IPR042197 -
Trre5g00398 1155 PANTHER DISEASE RESISTANCE PROTEIN RP 47 906 IPR044974 GO:0006952
Trre5g00398 1155 FunFam Probable disease resistance protein At1g61300 150 318 - -
Trre5g00398 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 427 IPR027417 -
Trre5g00398 1155 Coils Coil 40 60 - -
Trre5g00398 1155 Pfam NB-ARC domain 171 414 IPR002182 GO:0043531
Trre5g00398 1155 Gene3D Ribonuclease Inhibitor 914 1035 IPR032675 -
Trre5g00398 1155 Gene3D Ribonuclease Inhibitor 515 681 IPR032675 -
Trre5g00398 1155 Gene3D - 16 129 - -
Trre5g00398 1155 Gene3D Ribonuclease Inhibitor 685 913 IPR032675 -
Trre5g00398 1155 SUPERFAMILY L domain-like 494 900 - -
Trre5g00398 1155 Pfam Rx N-terminal domain 10 100 IPR041118 -
Trre5g00398 1155 Gene3D Ribonuclease Inhibitor 1036 1141 IPR032675 -
Trre5g00398 1155 ProSiteProfiles Leucine-rich repeat profile. 605 626 IPR001611 GO:0005515
Trre5g00398 1155 Gene3D - 149 320 IPR027417 -
Trre5g00398 1155 SUPERFAMILY L domain-like 904 1144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00398 Trre-Chr5 2500234 2503701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00398 192 505 WRKY Transcription Factor Family AT5G45050 25.155 3.46e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00398 - - mtr:11411709 1191.79