Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00396 ATGGCCACCCTTATTGCTCCTATCAACCATTCCCCAATTGAAGATGCACAAGCCCTTCAACAAGCTTTCAAAGGATGGGGTGCTGATAACAAGGCCATTATAGCAATATTGGGCCATAGAAATGTTCATCAGAGGCAACAGATTAGAAAGGCTTATGAGGAGCTTTTCGAAGAGGATCTCATCAAACGTCTTGAGTCAGAGATCTCTGGTGACTTTGAGCGAGCTGTGTATCGGTGGATGTTGGAACCTGCAGACCGTGATGCTGTTTTGATCAATGTAGCAATAAGGAATGGCAGCAAAAACTATCATGTGGTTGCTGAAATAGCTTCTGTGCTATCAGCCGAAGAGCTTTTGGCAGTGAGGCGCGCTTATCATAACCGCTACAAGCGTTCCATCGAAGAAGATGTGTCTGCTAACACCACCGGTCATCTTCGTCAGCTTTTGGTTGGATTAGTGAGCTCATTTAGGTATGAGGGTGATGAGATTAATGCAAAATTAGCACAAACTGAAGCTAATATTATTCATGAAAGTGTCAAAGAAAAGAAAGGAAACAATGAAGAAGAAGTCATTAGGATTCTTACTACAAGGAGCAAGACTCAACTTGTGGCAACTTTCAACCGCTATCGAGATGAACATGGCATCTCCATTAGTAAGAAATTGTTGGATCAAACATCTGATGATTTCCACAAGACTTTGCACACCGCTATTCGTTGCATCAATGACCAGAAGAAGTACTATGAGAAGGTTTTGCGCAATGCGATGAAAAAATTTGGAACGGATGAGGATGGACTGACTCGCGTGATTGTGACAAGGGCAGAGAAGGATCTGAGGGACATCAAAGAGCTTTACTATAAGAGAAACAGTGTTCATCTTGAAGATGCAGTCTCCAAAGAAATCTCAGGGGACTACAAGAAGTTCATCCTCACTCTTTTGGGAAAACAAGACTAA 948 0.4241 MATLIAPINHSPIEDAQALQQAFKGWGADNKAIIAILGHRNVHQRQQIRKAYEELFEEDLIKRLESEISGDFERAVYRWMLEPADRDAVLINVAIRNGSKNYHVVAEIASVLSAEELLAVRRAYHNRYKRSIEEDVSANTTGHLRQLLVGLVSSFRYEGDEINAKLAQTEANIIHESVKEKKGNNEEEVIRILTTRSKTQLVATFNRYRDEHGISISKKLLDQTSDDFHKTLHTAIRCINDQKKYYEKVLRNAMKKFGTDEDGLTRVIVTRAEKDLRDIKELYYKRNSVHLEDAVSKEISGDYKKFILTLLGKQD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00396 315 FunFam Annexin 165 240 - -
Trre5g00396 315 Gene3D Annexin 165 240 IPR037104 GO:0005509|GO:0005544
Trre5g00396 315 ProSiteProfiles Annexin repeat profile. 165 237 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 Gene3D Annexin 243 313 IPR037104 GO:0005509|GO:0005544
Trre5g00396 315 FunFam Annexin 242 313 - -
Trre5g00396 315 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 Gene3D Annexin 82 153 IPR037104 GO:0005509|GO:0005544
Trre5g00396 315 ProSiteProfiles Annexin repeat profile. 82 153 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 FunFam Annexin 82 152 - -
Trre5g00396 315 PRINTS Annexin family signature 174 200 IPR001464 GO:0005509|GO:0005544
Trre5g00396 315 PRINTS Annexin family signature 298 311 IPR001464 GO:0005509|GO:0005544
Trre5g00396 315 PRINTS Annexin family signature 254 274 IPR001464 GO:0005509|GO:0005544
Trre5g00396 315 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Trre5g00396 315 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Trre5g00396 315 ProSiteProfiles Annexin repeat profile. 241 312 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 Gene3D Annexin 1 81 IPR037104 GO:0005509|GO:0005544
Trre5g00396 315 PRINTS Plant annexin signature 118 132 IPR009118 -
Trre5g00396 315 PRINTS Plant annexin signature 160 180 IPR009118 -
Trre5g00396 315 PRINTS Plant annexin signature 226 244 IPR009118 -
Trre5g00396 315 Pfam Annexin 15 76 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 Pfam Annexin 248 310 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 Pfam Annexin 87 151 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 Pfam Annexin 171 233 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 SUPERFAMILY Annexin 3 315 IPR037104 GO:0005509|GO:0005544
Trre5g00396 315 ProSitePatterns Annexin repeat signature. 258 310 IPR018252 GO:0005509|GO:0005544
Trre5g00396 315 FunFam Annexin 1 81 - -
Trre5g00396 315 PANTHER ANNEXIN 12 310 - -
Trre5g00396 315 SMART annex3 258 310 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 SMART annex3 183 235 IPR018502 GO:0005509|GO:0005544
Trre5g00396 315 SMART annex3 99 151 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00396 Trre-Chr5 2493920 2496018 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00396 K17098 - gmx:100806472 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00396 5 2493920 2496018 Trre5g00396 5 2493920 2496018 ECH
Trre5g00396 5 2493920 2496018 Trre15g01434 15 11223980 11228047 PCT