Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00385 ATGGCATCTAGTAATCCATTCTTCGATGATATGCGGAGCAGATCTGGGGTTGACCCTCCTCAAACTGAAGAGTCGACAGAAATTCCTGAACTCATAAATGATCCTTTACAGACTGTTGTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAACTTTTAGAGTGCCCTGTGTGCTTGAATGCTATGTACCCTCCAATTCACCAGTGCTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCAAGAGTTCATGATCGGTGCCCTACTTGTCGGCATGAGCTCGGCAATATTAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTAGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATAGGCATATACCCGTATTACAGTAAGTTAAAACACGAGTCTCAATGTGTGTTTAGACCTTATAACTGTCCATATGCTGGTTCAGAATGTTCTGTCGTCGGTGATATACGTTACCTGGTTGCACACCTGAAAGATGATCATAAAGTGGACATGCATAGTGGTTGCACTTTTAATCATCGCTATGTCAAATCGAATCCACAAGAAGTTGAAAATGCCACGTGGATGCTAACGGTTTTTAGTTGCTTCGGTCAGTATTTTTGTCTGCATTTTGAAGCATTTCAACTGGGAATGGCTCCTGTCTACATAGCATTTTTGCGGTTCATGGGCGATGATAATGAGGCAAAGAACTATACCTACAGTCTCGAGGTAGGTGGAAATGGGAGGAAGATGACCTGGCAAGGTGTGCCTAGAAGCATTAGGGAAAGCCACCGCAAGGTTCGCGACAGTTTTGACGGTCTCATCATTCAAAGGAACATGGCTCTCTTCTTTTCCGGGGGTGACAGGAAGGAATTGAAACTACGAGTTACCGGAAGGATTTGGAAAGAACAATGA 915 0.4372 MASSNPFFDDMRSRSGVDPPQTEESTEIPELINDPLQTVVKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCVFRPYNCPYAGSECSVVGDIRYLVAHLKDDHKVDMHSGCTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMTWQGVPRSIRESHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00385 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 303 - -
Trre5g00385 304 SUPERFAMILY RING/U-box 48 96 - -
Trre5g00385 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre5g00385 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Trre5g00385 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 107 IPR013083 -
Trre5g00385 304 SUPERFAMILY TRAF domain-like 109 301 - -
Trre5g00385 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Trre5g00385 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Trre5g00385 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Trre5g00385 304 CDD RING-HC_SIAHs 54 92 - -
Trre5g00385 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 162 IPR013083 -
Trre5g00385 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Trre5g00385 304 MobiDBLite consensus disorder prediction 1 30 - -
Trre5g00385 304 CDD Sina 170 298 - -
Trre5g00385 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 163 297 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00385 Trre-Chr5 2410632 2412300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00385 47 304 C3H Transcription Factor Family AT2G41980 79.457 1.09e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00385 K04506 - gmx:100793457 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00385 5 2410632 2412300 Trre5g00385 5 2410632 2412300 ECH
Trre5g00385 5 2410632 2412300 Trre15g01447 15 11307367 11309215 PCT