Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00382 ATGGAGATGTCTATACATCAAGACAATTCTGATATCAACGGTATGGCAGGGTCAGGATCTTGCCTCTATGATCTCTTTTGCACTGAAACACCAAGTTTGAATTCTCAAAGTCAAAGAGAGCGATGGATGTTATCTGGTCCACAGGAAAGGTTAGACAATCTGATGCGTCAAGCTGGAAACAAGTTCTGCGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTCTTCAAGTCTCGGAGTATTTATTTGCATTAAGTGCTCTGGTATACACAGAAGCTTAGGAGTTCATATATCTAAGGTTCTGTCACTGAATCTGGATGATTGGACAGACGAACAAGTTGATTTGTTGGTCCACTTGGGTGGAAATACAGTAATCAATAAGAGGTATGAAGCTTGTATGCCAAGTAACATTAAAAAACCTAGACCGAATTCTTCCATTGAGGAGCGCTCCGATTTTATTAGGAGAAAATATGAGCTGCAACAATTTTTGGATACCGAGGAGAATTTGTCTTGTCCCTTTTTACCATCCCACGCAAGAACTTCTTCATCTGGTCACGTAAGAACTTCGTCATCCGGTCAGAGTAGTTCCTCATCTAACGTTCCTCCACTAGACAAAAAACGCTATGATAAACAATCAACTAAAAATCGTATTGGACTATCATTTCGAAACAGCTGGGGAAGAAAAGAGTCTGAGAGTAAGAGTACAAAGAAGAGTACCTCATTGGCAGGTATGGTTGAATTTGTAGGGTTGATTAAGGTTAATGTGGTAAAAGGCACCAACCTAGCTATCAGAGATTTAATGACTAGTGACCCTTATGTCATCCTTTCTCTTGGTCACCAATCGGTGAAGACACGCGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAAAGTCTAATGCTATCGATTCCAGAGAGCATCCCTCCTCTTAAAGTGATTGTATATGACAAAGATTCATTCAAAAATGATGATTTTATGGGAGAGGCTGAAATAGATATTCAACCACTTGTATCAGCAGCAAAAGCATATGAGAAATCTTCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGATAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGATATCTCATTGAGGTTACAAAATGTTGAGAGAGGTGTGCTTGAAATTGAACTTGAATGTGTTCCTCTTACTCAATAG 1218 0.3924 MEMSIHQDNSDINGMAGSGSCLYDLFCTETPSLNSQSQRERWMLSGPQERLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLNLDDWTDEQVDLLVHLGGNTVINKRYEACMPSNIKKPRPNSSIEERSDFIRRKYELQQFLDTEENLSCPFLPSHARTSSSGHVRTSSSGQSSSSSNVPPLDKKRYDKQSTKNRIGLSFRNSWGRKESESKSTKKSTSLAGMVEFVGLIKVNVVKGTNLAIRDLMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPESIPPLKVIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIISLEEGKVRQDISLRLQNVERGVLEIELECVPLTQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00382 405 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Trre5g00382 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 170 IPR001164 GO:0005096
Trre5g00382 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 247 405 - -
Trre5g00382 405 SMART C2_3c 250 345 IPR000008 -
Trre5g00382 405 Pfam C2 domain 250 340 IPR000008 -
Trre5g00382 405 ProSiteProfiles C2 domain profile. 232 347 IPR000008 -
Trre5g00382 405 MobiDBLite consensus disorder prediction 178 202 - -
Trre5g00382 405 MobiDBLite consensus disorder prediction 178 212 - -
Trre5g00382 405 FunFam stromal membrane-associated protein 1 isoform X1 33 168 - -
Trre5g00382 405 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Trre5g00382 405 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Trre5g00382 405 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Trre5g00382 405 CDD C2_ArfGAP 248 392 - -
Trre5g00382 405 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Trre5g00382 405 Pfam Putative GTPase activating protein for Arf 49 164 IPR001164 GO:0005096
Trre5g00382 405 Gene3D Arf GTPase activating protein 31 170 IPR038508 -
Trre5g00382 405 Gene3D C2 domain 247 403 IPR035892 -
Trre5g00382 405 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 246 340 IPR035892 -
Trre5g00382 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 405 IPR044518 GO:0005096|GO:0005543
Trre5g00382 405 CDD ArfGap 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00382 Trre-Chr5 2398207 2401202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00382 48 405 C2H2 Transcription Factor Family AT4G05330 48.045 4.80e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00382 K12486 - gmx:100799376 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00382 5 2398207 2401202 Trre5g00382 5 2398207 2401202 ECH
Trre5g00382 5 2398207 2401202 Trre15g01450 15 11323948 11326487 PCT