Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00378 ATGGGATTGAGTGAAGTGATGCATAAGTTGCAGTGTACTTTGTTTGGACCCTATGTTGATGAGTTGAATGCTTTTATTGGTTCTGGTGACTACAACAATGCTATTGTTGTTCTTCAATTTGCCAAGGCTAAGCCATTTCAAGACAAGATACACATACAAAACTGTTTGAACTGTAGCAAGTTGTACTTTAACCCTAACTGCCCAGAAAGTGCAGTCTTGAGGCAAAGCTTGCCTGAAAGTGTAGAAAATCCTTCTCCAATCACTCTTACTCAAATCCAGATGGAGCCTGTTGTTAGCCCAATGGATGAGTTTGTATTCAACACACCAAGAATCACTTTGCAAGAACTTAAAGATTCTACAACTGAATCACTTCATGTTGTATGTGCTACTGTCAAGAAAATATTGAATCCAGATTGTTTTTGGTATACTGCCTGTGTTTGTAACAAATCTGTGATACCTGATTCAAACATGTTTTTTTGTGAAAAATGCAACAAGCATGTGGTTAAGGTTTACCCAAGGTATTGTATGAAGGTCAGAGTTATGGACCACACAGATTCTGCCAGTTTTGTGATATTTGACAGAGATGCAGCTTCATTGTTCAACATGAGTTGTGCAGAGATGTTAAATGAAACTCAAAGGAACGGCACTGTTGGAGTTATTCCACCTCAAATTTCAAAGCTTCTTGACATGAATTTGTTGTTCAAGGTTGAGACAAAACCTTCAACAAATCCTAGGTTTGAGCAAACTTTTAGGGTTAGAAAAATTTGCACTGATTCTGCCATCATTAAGACATTCAAGGACAAGTGGGATAATGAAGAGGCATCTATTAGCAAAATAAACAATGAGGTTGGTTCTTTGAGTACTTTGCTGGAAAAAGGAAAACATCTTTTAGCGTGTAGTACAAACAACATCCTATCTCAGGATTCAGCTTCGTTGACTGCGAGTAGTGGCAGCGGAAAGGGAAAGGAAGCAGCAAATCTCAGCAGTCCTGCTCCAATAACTCAAGATTTAATGAAGAAATTTACGTCAACTGTTATCAACCTTGATGATGATTCTGTTTCTGCATTAGATCTAATTAAGACTCAACAAAGTCAGACTTCTGTTCTATCTTGCAAGGATTTAGAGTCATTGAGTGGAAGCAGTATGGAATCTCAACCAAAAGATGTTGAAGTGAATGGAACTCCTGTTATATATTTACTTCAAACCAAGCCTACTGCTGCTGAGGGTAAAGAGATTGAAAAAACTGTTGTAGCTGATGATGAGGTTGTATCAAGTGCAGAAAATGATAATACTGTGGAGAAGGAGTTTGGTGAATTAAGTGGAGCCAAAGTATATGCAAAGGTTTTAGAGGGTACTCCTGTTGAACTTCACCAACCAGTGGAGGCACATGAAGACTTGGCTGTTGTAAACCTTGAGGGTGATTCGCCTCAACATGATAAGTTGTTTAAGACTCCCAAGGCATTAGGATCAAAGGGAGTTAAGGGCAGGAAGTTTGTGAAGAGAGTTTCACCTGATAAAGTTGCAGAGGAAGATAATGCACCAATTAAGCTATTGAAAAGGGTTATTAAACAAGAGAAAATGTGA 1584 0.3838 MGLSEVMHKLQCTLFGPYVDELNAFIGSGDYNNAIVVLQFAKAKPFQDKIHIQNCLNCSKLYFNPNCPESAVLRQSLPESVENPSPITLTQIQMEPVVSPMDEFVFNTPRITLQELKDSTTESLHVVCATVKKILNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVVKVYPRYCMKVRVMDHTDSASFVIFDRDAASLFNMSCAEMLNETQRNGTVGVIPPQISKLLDMNLLFKVETKPSTNPRFEQTFRVRKICTDSAIIKTFKDKWDNEEASISKINNEVGSLSTLLEKGKHLLACSTNNILSQDSASLTASSGSGKGKEAANLSSPAPITQDLMKKFTSTVINLDDDSVSALDLIKTQQSQTSVLSCKDLESLSGSSMESQPKDVEVNGTPVIYLLQTKPTAAEGKEIEKTVVADDEVVSSAENDNTVEKEFGELSGAKVYAKVLEGTPVELHQPVEAHEDLAVVNLEGDSPQHDKLFKTPKALGSKGVKGRKFVKRVSPDKVAEEDNAPIKLLKRVIKQEKM 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00378 527 CDD RPA1_DBD_B_like 9 78 - -
Trre5g00378 527 Gene3D - 105 263 IPR012340 -
Trre5g00378 527 CDD RPA1_DBD_C 127 239 IPR047192 -
Trre5g00378 527 Gene3D - 4 84 IPR012340 -
Trre5g00378 527 Pfam Replication factor-A C terminal domain 128 239 IPR013955 -
Trre5g00378 527 SUPERFAMILY Nucleic acid-binding proteins 108 254 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00378 Trre-Chr5 2383782 2386322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00378 56 204 Core DNA Replication Machinery Family AT2G06510 26.115 3.05e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00378 - - tpra:123915045 573.163