Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00377 ATGAGATTAAGGCATAAGTTGCAGTGTACTTTGTTTGGACCCTATGTTGATGAGTTGAATGCTTTTATTGGTTCTGGTGACTACAACAATGCTATTGTTGTTCTTCAATTTGCCAAGGCTAAGCCATTTCAAGACAAGATACACATACAAAACTGTTTGAACTGTAGCAAGTTGTACTTTAACCCTAACTGCCCAGAAAGTGCAGTCTTGAGGCAAAGCTTGCCTGAAAGTGTAGAAAATCCTTCTCCAATCACTCTTACTCAAATCCAGATGGAGCCTGTTGTTAGCCCAATGGATGAGTTTGTATTCAACACACCAAGAATCACTTTGCAAGAACTTAAAGATTCTACAACTGAATCACTTCATGTTGTATGTGCTACTGTCAAGAAAATATTGAATCCAGATTGTTTTTGGTATACTGCCTGTGTTTGTAACAAATCTGTGATACCTGATTCAAACATGTTTTTTTGTGAAAAATGCAACAAGCATGTGGTTAAGGTTTACCCAAGGTATTGTATGAAGGTCAGAGTTATGGACCACACAGATTCTGCCAGTTTTGTGATATTTGACAGAGATGCAGCTTCATTGTTCAACATGAGTTGTGCAGAGATGTTAAATGAAACTCAAAGGAACGGCACTGTTGGAGTTATTCCACCTCAAATTTCAAAGCTTCTTGACATGAATTTGTTGTTCAAGGTTGAGACAAAACCTTCAACAAATCCTAGGTTTGAGCAAACTTTTAGGGTTAGAAAAATTTGCACTGATTCTGCCATCATTAAGACATTCAAGGACAAGTGGGATAATGAAGAGGCATCTATTAGCAAAATAAACAATGAGGTTGGTTCTTTGAGTACTTTGCTGGAAAAAGGAAAACATCTTTTAGCGTGTAGTACAAACAACATCCTATCTCAGGATTCAGCTTCGTTGACTGCGAGTAGTGGCAGCGGAAAGGGAAAGGAAGCAGCAAATCTCAGCAGTCCTGCTCCAATAACTCAAGATTTAATGAAGAAATTTACGTCAACTGTTATCAACCTTGATGATGATTCTGTTTCTGCATTAGATCTAATTAAGACTCAACAAAGTCAGACTTCTGTTCTATCTTGCAAGGATTTAGAGTCATTGAGTGGAAGCAGTATGGAATCTCAACCAAAAGATGTTGAAGTGAATGGAACTCCTGTTATATATTTACTTCAAACCAAGCCTACTGCTGCTGAGGGTAAAGAGATTGAAAAAACTGTTGTAGCTGATGATGAGGTTGTATCAAGTGCAGAAAATGATAATACTGTGGAGAAGGAGTTTGGTGAATTAAGTGGAGCCAAAGTATATGCAAAGGTTTTAGAGGGTACTCCTGTTGAACTTCACCAACCAGTGGAGGCACATGAAGACTTGGCTGTTGTAAACCTTGAGGGTGATTCGCCTCAACATGATAAGTTGTTTAAGACTCCCAAGGCATTAGGATCAAAGGGAGTTAAGGGCAGGAAGTTTGTGAAGAGAGTTTCACCTGATAAAGTTGCAGAGGAAGATAATGCACCAATTAAGCTATTGAAAAGGGTTATTAAACAAGAGAAAATGTGA 1575 0.3829 MRLRHKLQCTLFGPYVDELNAFIGSGDYNNAIVVLQFAKAKPFQDKIHIQNCLNCSKLYFNPNCPESAVLRQSLPESVENPSPITLTQIQMEPVVSPMDEFVFNTPRITLQELKDSTTESLHVVCATVKKILNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVVKVYPRYCMKVRVMDHTDSASFVIFDRDAASLFNMSCAEMLNETQRNGTVGVIPPQISKLLDMNLLFKVETKPSTNPRFEQTFRVRKICTDSAIIKTFKDKWDNEEASISKINNEVGSLSTLLEKGKHLLACSTNNILSQDSASLTASSGSGKGKEAANLSSPAPITQDLMKKFTSTVINLDDDSVSALDLIKTQQSQTSVLSCKDLESLSGSSMESQPKDVEVNGTPVIYLLQTKPTAAEGKEIEKTVVADDEVVSSAENDNTVEKEFGELSGAKVYAKVLEGTPVELHQPVEAHEDLAVVNLEGDSPQHDKLFKTPKALGSKGVKGRKFVKRVSPDKVAEEDNAPIKLLKRVIKQEKM 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00377 524 CDD RPA1_DBD_B_like 6 75 - -
Trre5g00377 524 CDD RPA1_DBD_C 124 236 IPR047192 -
Trre5g00377 524 Gene3D - 2 81 IPR012340 -
Trre5g00377 524 Pfam Replication factor-A C terminal domain 125 236 IPR013955 -
Trre5g00377 524 Gene3D - 102 260 IPR012340 -
Trre5g00377 524 SUPERFAMILY Nucleic acid-binding proteins 105 251 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00377 Trre-Chr5 2383565 2386322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00377 53 201 Core DNA Replication Machinery Family AT2G06510 26.115 3.41e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00377 - - tpra:123915045 573.163