Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00376 ATGCAATCACAATCTAACTACTCACCCATAAAACCAATGAACTCACTCAAACAAATATTTCAAAACATTTTCTCAGATAACAGTAACATCATGCTTGCTGCTATCATTTCCTTATTACTTGTCATTCTCTTTGTTCTTCTTCTTCATCTTTATGCTAAATGGTTCTTATCACAAGCACATGCTCAAGCACAAGCTCGTAGACGCCGTCGTCGAAGAACCACAGTTACTGTCTCAGATGTTCTTGGTCCTGCAAGATTCCATCACTTCCATAGCTTCAACATTGAAGACTCACCTTTGTCTAGCTCAAACACTAAAGGACTTGATTCTTCTATCATTGCTTCAATTCCTTTGTTTATTTATGCAGAGAAGGTTCAAAAGAATGAAAATGAACAAGAACTTGAATGTGTTATTTGTTTGAGTGGTTTTGAAAATGGTGAAATGGGAAGATGTTTACCAAAATGTGGACATGGTTTTCATGTAGAATGTATTGATATGTGGTTGAATTCACATTCTAATTGTCCTATTTGTAGAGCTTCAATTGTTGTTTTTGAGAATGATTCTTCAAGTAATAATGTTGAATATGGTTCTTCAAGTTTTGTTGAAATTGTGATTGATGAAAATTCTAGTTCTGAGATTAGAGAGAGAGAACAAGAGAATGAAAGAGTGTTAGTACAGAGTGATTCTGTTTCAGAAACTTCATCTTTGTTTGGTTGTTCTTTGAAGACAGTTTTCAGCAAAGTTTTTCCATCTTCCAATGTTAATGAATCACAACAATCTTAA 780 0.3397 MQSQSNYSPIKPMNSLKQIFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLSQAHAQAQARRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSPLSSSNTKGLDSSIIASIPLFIYAEKVQKNENEQELECVICLSGFENGEMGRCLPKCGHGFHVECIDMWLNSHSNCPICRASIVVFENDSSSNNVEYGSSSFVEIVIDENSSSEIREREQENERVLVQSDSVSETSSLFGCSLKTVFSKVFPSSNVNESQQS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00376 259 CDD RING-H2_EL5-like 134 177 - -
Trre5g00376 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 182 IPR013083 -
Trre5g00376 259 Pfam Ring finger domain 134 177 IPR001841 -
Trre5g00376 259 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Trre5g00376 259 FunFam RING-H2 finger protein ATL1 91 182 - -
Trre5g00376 259 SMART ring_2 135 176 IPR001841 -
Trre5g00376 259 SUPERFAMILY RING/U-box 123 184 - -
Trre5g00376 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00376 Trre-Chr5 2382410 2383189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00376 24 178 Rapid Response to Elicitors AT3G16720 38.710 2.01e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00376 - - lang:109329145 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00376 5 2382410 2383189 Trre5g00376 5 2382410 2383189 ECH
Trre5g00376 5 2382410 2383189 Trre9g03771 9 46142716 46143405 PCT