Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00360 ATGAAAGAAGCATGGAGATTCATTACGTTTGTAGTAATTATTGGGGTGATGGTGTCTTTCCAATTCAATTCATGTTATGGTAAAGAAGGAGTCATTGATACATGCTTTTGGTTTGGGATGAAATGCTCTCAAGTAAATGTTGTGACCTTGCACATTGGCCAACAAGGGGATATAGTTATACCATATAGCAGGAAACTTATACAAACAAAAAATTCTGCTAACTCACACAAAACCAAGAGGCTTGATGATGGCAAAAAGACTCCTTCGCCATCATCATCGCCATTTTCTAAATATATTTCACCATCACAAAGTCTCTCAAATTCACCATCGCCATCGATTTTCCTTCAATCATCAATAACATCACCGGAACTTTCCCCTTCGCCATCACCCTCTCCCTCGCCTTCACCTGTGATAGCGCCAACAACTTCACACTCACCACTTACATCAAATCCACCTACAATTGTGTCCACACAATCACATTCTAATTGGATTTCAGCACCTTCTCCTTCTTCATCTTCAAACCTAAGGAATTCAAACCAAAAGCATCATTCTGTTATTATATGGTCAACAGTTGGAGGGTTCTCCTTCCTGGTTTTGGTGTCATTCACTGTTTTCATTTGCTTCAGAAGTAGTAAAGTTGCTACTGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAGCTTCGAAAAGCATTTGTAACAGGTATTCCAAGCCTTAAACGAGCCGAACTAGTAGTAGCTTGTGAAGATTTTAGCAACATTATTGGTTCTTTGCAAGATGAGACTATCTATAAAGGAACTCTTTCAAGTGGAGTTGAGATAGCTGTCGTATCGTCTTCCATGACTTCATCTCAAGACTGGTCAAAAAATATGCAAGCTCAGTTCCGAAAAAAGATTGAGATGTTATCGAGGGTAAACCACAAGAACTTTGTTAATCTTATTGGTTATTGTGAAGAGAATAAGCCATTTACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACACTGTTTGAACATCTACATATTAGAGAAACCGAACAACTAGACTGGAGAACGAGAATGAGGATAGCTATGGGAGTAGCATACTGTCTAGACCACATGCATAATCTAACACCACCTATTGCACAAAGAAACCTTCTATCTTCCTCTATATACCTCACCGAAGATTATGCTGCTAAAATATCAGACCTTAGTTTCTGCACCGACAAAGTTGATACAAAGAAGATTTCTAAGAAAACCTCAGCAGAAGAAATAAATGACAATGTGTATAGTTTTGGTGTAATATTGTTTGAATTGATAACAGGAAAAGTTCCCTATGCAGTGGAAAATGGTTTTCATACAAATTGGGCTGCAGAATATATAAAAGGACAACCATTGAGAGAGTTGGTAGATAAAAGCTTATTGAACTCTTTGAAAGATCATGAAATTGAGAAATGGTCAGAAGTGATTAATAATTGTGTAGATCTTGATCAAGAAAAAAGGCCATCAATGAAAGAGATTACTTCTAAGTTGAAGGAAATTACTGATATGGGACCTGATGGTGCAACTCCAAAATCATCACCTCTTTGGTGGGCTGAAATTGAAATTATGTCCACAGATGATTTATGTTAA 1611 0.3774 MKEAWRFITFVVIIGVMVSFQFNSCYGKEGVIDTCFWFGMKCSQVNVVTLHIGQQGDIVIPYSRKLIQTKNSANSHKTKRLDDGKKTPSPSSSPFSKYISPSQSLSNSPSPSIFLQSSITSPELSPSPSPSPSPSPVIAPTTSHSPLTSNPPTIVSTQSHSNWISAPSPSSSSNLRNSNQKHHSVIIWSTVGGFSFLVLVSFTVFICFRSSKVATVKPWATGLSGQLRKAFVTGIPSLKRAELVVACEDFSNIIGSLQDETIYKGTLSSGVEIAVVSSSMTSSQDWSKNMQAQFRKKIEMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIRETEQLDWRTRMRIAMGVAYCLDHMHNLTPPIAQRNLLSSSIYLTEDYAAKISDLSFCTDKVDTKKISKKTSAEEINDNVYSFGVILFELITGKVPYAVENGFHTNWAAEYIKGQPLRELVDKSLLNSLKDHEIEKWSEVINNCVDLDQEKRPSMKEITSKLKEITDMGPDGATPKSSPLWWAEIEIMSTDDLC 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00360 536 MobiDBLite consensus disorder prediction 87 124 - -
Trre5g00360 536 PANTHER PROTEIN MALE DISCOVERER 2 77 532 - -
Trre5g00360 536 FunFam Inactive receptor-like serine/threonine-protein kinase 222 330 - -
Trre5g00360 536 ProSiteProfiles Protein kinase domain profile. 248 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00360 536 Pfam Protein tyrosine and serine/threonine kinase 254 504 IPR001245 GO:0004672|GO:0006468
Trre5g00360 536 MobiDBLite consensus disorder prediction 125 139 - -
Trre5g00360 536 SUPERFAMILY Protein kinase-like (PK-like) 234 504 IPR011009 -
Trre5g00360 536 MobiDBLite consensus disorder prediction 140 176 - -
Trre5g00360 536 Gene3D Phosphorylase Kinase; domain 1 226 330 - -
Trre5g00360 536 MobiDBLite consensus disorder prediction 71 176 - -
Trre5g00360 536 Gene3D Transferase(Phosphotransferase) domain 1 331 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00360 Trre-Chr5 2270004 2273532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00360 230 506 Receptor kinase-like Gene Family AT1G67720 31.544 3.50e-37 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre5g00360 PK_Tyr_Ser-Thr 1.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00360 - - gmx:100801161 597.045