Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00359 ATGAAAAAAAGAGTTGGTATTGTCTCAATACCTTATGCACTAGCATCAGGAGGATGGTTAAGCATAATCCTACTATTTACAATAGCCATAGCATGTTGTTACACAGGAACATTGGTCAAAAAATGCATGGACATGGATCTTAATATCAGAACCTTCCCAGACATAGGTCAATATGCATTTGGATCCAAAGGAAGATTAATGGTATCAATAATCATGAATTCAGAACTCTATTTAGCAGTAACAGGTTTTCTAATTCTAGAAGGAGACAACCTTAACAAACTAATACCAAATATGGAAATCAACATAGGTGGTTTAACAATTGGTGGTACAACAATGTTTACTATGATTACTACAATTGTTATTTTGCCAACTGTTTTGTTTGAGGATATGAGTTTGTTGTCTTATGTTTCTGCTAGTGGTGCTATAGCTTCTTCAATCTTCATTTTGTCTTTGTTTTGGAATGGTGCTGTTGATGGAACAGGGTTTCATGGTAAAGGAAGAGTTTTTAATTTGAGTGGAATACCTTCTGCTGTTAGTTTATATGCTTTTTGTTATAGTGCTCATCCGATTTTGCCGACTCTCTACAATTCTATGAGGAATAAAAGTCATTACTCCGGGGTCCTATTTGTAAGCTTTTTAGCATGCACATTTGGTTATGCAGCAGCAGCAATTCTAGGCTACTCAATGTTTGGACAAGAAGTTGAATCACAAGTAACTTTAAACCTCCACACAGGAAAATTAAGTTCAAGAATAGCAATATACACAACCTTGGTTAATCCAATAGCAAAATATGCATTAATGCTTACACCAGTCATAAATGCAATAAAAATGAAAGTTTCATGCAATTACTCTAACAAAAGAATCACACATATGATTATTAGTACATCATTATTAGTAAGTTCTCTTATTATAGCAGTGACCATTCCTTTATTTGGATACCTTATGTCACTTGTTGGAGCATTGTTAAGTGTTTCAGCTTCAATTTTAGTTCCATCAATTTGTTACTTGAAGATTTCAGGAGCTTACAAGAGATTTGGATCTGAAATGATTGTTAACTATTTGATTATTGTGATGGGGGTTGCTATTGCTGTTTTTGGTACTTATAGAGCTCTTGTAGATATAATTCAAAACTTGTAA 1137 0.336 MKKRVGIVSIPYALASGGWLSIILLFTIAIACCYTGTLVKKCMDMDLNIRTFPDIGQYAFGSKGRLMVSIIMNSELYLAVTGFLILEGDNLNKLIPNMEINIGGLTIGGTTMFTMITTIVILPTVLFEDMSLLSYVSASGAIASSIFILSLFWNGAVDGTGFHGKGRVFNLSGIPSAVSLYAFCYSAHPILPTLYNSMRNKSHYSGVLFVSFLACTFGYAAAAILGYSMFGQEVESQVTLNLHTGKLSSRIAIYTTLVNPIAKYALMLTPVINAIKMKVSCNYSNKRITHMIISTSLLVSSLIIAVTIPLFGYLMSLVGALLSVSASILVPSICYLKISGAYKRFGSEMIVNYLIIVMGVAIAVFGTYRALVDIIQNL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00359 378 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Trre5g00359 378 PANTHER OS05G0424000 PROTEIN-RELATED 6 364 - -
Trre5g00359 378 Pfam Transmembrane amino acid transporter protein 6 369 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00359 Trre-Chr5 2263414 2265313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00359 5 375 Amino Acid or Auxin Permease AAAP Family AT3G28960 54.447 7.30e-143 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00359 K15015 - gmx:100784690 534.643