Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00348 ATGGTACAAAAGCTTTCTAATGTTGATATTAAAGGATCTGGGTTTAACTTTGTACCTATTTCTGAAGTTGTTGGAGGTTCTTATGACACTGATTATTTAGTTGATGTTATTGGCATTTTGACTGGTGTTGGAACTGAGCGTGAAGTCACAAACCAAAATGGAAGCACCACTAAGTTGAATGTGATTGCTTTAGAGGCTGAAGGGCATAAGTTGCAGTGTACTTTGTTTGGACCCTATGTTGATGAGTTGAATGCTTTTATTGGTTCTGGTGACTACAACAATGCTATTGTTGTTCTTCAATTTGCCAAGGCTAAGCCATTTCAAGACAAGATACACATACAAAACTGTTTGAACTGTAGCAAGTTGTACTTTAACCCTAACTGCCCAGAAAGTGCAGTCTTGAGGCAAAGCTTGCCTGAAAGTGTAGAAAATCCTTCTCCAATCACTCTTACTCAAATCCAGATGGAGCCTGTTGTTAGCCCAATGGATGAGTTTGTATTCAACACACCAAGAATCACTTTGCAAGAACTTAAAGATTCTACAACTGTAAGACTTTGTTTATAG 564 0.3794 MVQKLSNVDIKGSGFNFVPISEVVGGSYDTDYLVDVIGILTGVGTEREVTNQNGSTTKLNVIALEAEGHKLQCTLFGPYVDELNAFIGSGDYNNAIVVLQFAKAKPFQDKIHIQNCLNCSKLYFNPNCPESAVLRQSLPESVENPSPITLTQIQMEPVVSPMDEFVFNTPRITLQELKDSTTVRLCL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00348 187 SUPERFAMILY Nucleic acid-binding proteins 15 142 IPR012340 -
Trre5g00348 187 CDD RPA1_DBD_B_like 35 139 - -
Trre5g00348 187 Gene3D - 8 145 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00348 Trre-Chr5 2178420 2179355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00348 15 160 Core DNA Replication Machinery Family AT2G06510 23.841 7.42e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00348 - - tpra:123915045 293.893