Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00332 ATGGCACAGTTTCATGTTTTGGCTGTTGATGATAGTATCATTGATAGAATGTTGATTGAAAGACTCCTCAAAACCTCTTCATTTCATGTTACGGTGGTTGATTCTGGTACCAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAGGTGAGGAATGAAAAGCCTCCATCTATTGCAACAGAAACAGATCAGGTTGTAGAAGTGAATCTGATCATAACTGATTATTGTATGCCAGGAATGACAGGCTATGATCTGCTGAGAAAGGTCAAGGAATCTAATTCTCTTAAAGATATACCGGTTGTGATTATGTCCTCAGAGAATGTCCCATCAAGGATCAACAGATGCTTAGAAGAAGGAGCTGAAGAATTCTTTCTGAAACCAGTACAACAATCAGATGTAAACAAGCTAAAACCACATTTGTTGAAATCAAAAATTAAGAATGGTGATGATCAAATCAACAACAAAAGGAAGGAAACAGAACAACAATGCAATTCCATTGGAAAACAAGGCAAAAAATGTAACCTATAG 528 0.3674 MAQFHVLAVDDSIIDRMLIERLLKTSSFHVTVVDSGTKALKFLGLVEDEVRNEKPPSIATETDQVVEVNLIITDYCMPGMTGYDLLRKVKESNSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLKPHLLKSKIKNGDDQINNKRKETEQQCNSIGKQGKKCNL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00332 175 SMART REC_2 4 140 IPR001789 GO:0000160
Trre5g00332 175 Pfam Response regulator receiver domain 6 133 IPR001789 GO:0000160
Trre5g00332 175 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 156 IPR045279 GO:0009736
Trre5g00332 175 Gene3D - 5 168 - -
Trre5g00332 175 CDD REC_typeA_ARR 6 136 - -
Trre5g00332 175 SUPERFAMILY CheY-like 3 136 IPR011006 -
Trre5g00332 175 ProSiteProfiles Response regulatory domain profile. 5 141 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00332 Trre-Chr5 2102878 2104490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00332 2 147 Response Regulator Gene Family AT3G57040 71.429 1.44e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g00332 Response_reg 1.3e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00332 K14492 - gmx:100818762 260.766