Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00327 ATGAGTATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCATCCCCTTCCCTTCACCATCATCATCAACAACAACAACAAAATCAAAATCAAAACCAACCCATTTCACATGATCACAATTCAAACCACTCTTTACCTTCATCAGCTTCATTAAGTGTTGGTTTTGGCATTTTTCCACTCCTAACAGCCACACCCTGCATGCCACAACAACAACCTCAAAACAATGATGTTCAAGAAAATCCTAACCAAAACAATAACTTTTGGAACCTTAGGATGTGTCCTGAACCAATGAATCTTCCAAAAAAAGGAGTTATCAATGTTGATGATGAAAATCACAATCATAATAGCAAGATGGTTTTGATGGAGAGTGAAGAAAATGGTGTTTATGGTTCTGAGTATAGAGTTTGTCATGATTGTGGTAATAGAGCTAAGAAAGATTGTGTTTTTAGAAGATGTAGGACTTGTTGTAAGGGAAGAGGTTATGATTGTAATACTCATTTGAAGAGTACTTGGATTCCTTCAACTCGTCGTCGGGAACGTGAGGTGGAGATGATTGGTGGCGGTGGTGGTGGTGATGGTGAGGGTTGTTATGGTGTTAAGAGAGCAAAAACATTATTAGGGTCATCACAAAATGCTACTGCTACTTCTCACAGTTCAAACTCTAATGGTACTACTCCAAAAAGCTTTGCTACTAGCTCTTGTCATCAAGATGCTAGTTTCAAAGAGGCATTACCAGGTCATGTTAATGCACCTGCTGTATTCAGATGCCATAGAGTAACTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTGGCAACAGTTCATATTTGTGGTCATGTTTTCAAAGGGTTTCTCTATGATCATGGAGTTGATGGAAAAAATCCAATGCCTTGTGTTTCTGAACTTCAATTAGGAAGTGGAAAGAATGGTGAATGTTCTTCTGCAATTGGTGTTACAACAAATAATGCTTACCCTGCTTCTACTAGCTAG 993 0.3867 MSMLGLRDLVLIAPSPSLHHHHQQQQQNQNQNQPISHDHNSNHSLPSSASLSVGFGIFPLLTATPCMPQQQPQNNDVQENPNQNNNFWNLRMCPEPMNLPKKGVINVDDENHNHNSKMVLMESEENGVYGSEYRVCHDCGNRAKKDCVFRRCRTCCKGRGYDCNTHLKSTWIPSTRRREREVEMIGGGGGGDGEGCYGVKRAKTLLGSSQNATATSHSSNSNGTTPKSFATSSCHQDASFKEALPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHICGHVFKGFLYDHGVDGKNPMPCVSELQLGSGKNGECSSAIGVTTNNAYPASTS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00327 330 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 319 IPR007818 GO:0003700|GO:0006355
Trre5g00327 330 Pfam Domain of unknown function (DUF702) 134 292 - -
Trre5g00327 330 NCBIfam LRP1 C-terminal domain 244 291 IPR006511 -
Trre5g00327 330 MobiDBLite consensus disorder prediction 17 48 - -
Trre5g00327 330 MobiDBLite consensus disorder prediction 208 228 - -
Trre5g00327 330 MobiDBLite consensus disorder prediction 18 48 - -
Trre5g00327 330 MobiDBLite consensus disorder prediction 66 85 - -
Trre5g00327 330 NCBIfam putative zinc finger domain, LRP1 type 135 177 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00327 Trre-Chr5 2033523 2035268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00327 1 310 C2H2 Transcription Factor Family AT5G12330 41.270 1.43e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre5g00327 DUF702 1.9e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00327 - - gmx:100806835 399.823