Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00320 ATGGCAACTATTGTGGGAGAAGCACTCCTTGCAGCTTCTTTGGAAGTGTTGTTGGAAAAGATTGTTTCTGGTGAATTCGGTGAGTTATTTCGGAGTACCAAACTTGACGCTGCGCTGTTGGGAAAGCTGGAGATAACACTGGTGAGTCTTCAAGCTGTACTTCATGATGCTGAGGAGAAGCAGATCACCAACCCTGCTGTCAAGCAATGGCTGGATATGATACGCGACGCTGTCTTTGAAGCTGGCGATTTGTTTGATGAAATCAACACGGATGCTTTGAGCCGCAGAGTGGAAGTCGAGTATGAAACCCGAACTGCTACTTCTCAGGTGCTGAAAAAAATTTCTTCTCGTTTCAAAAGATTTAATAGAAAGGTCAATTCTAAACTGCAAAAATTATTCGAAAGATTAGAACATTTAAGAAAACAGAATCTTAAATTGAAAGAATGTGTTTCAAGCAATGTTTGGCACGGAACTCCTACAAGTTCTGTAATGGTAGATGAATCTGCTATTTATGGCAGAGATAATGATAGAAAGAAGCTCAAAGAGTTTTTGTTGTCAGAAGATGGTGGTGACGGTGGAAGTAAAATCGGAGTGATTTCCATTGTCGGCATGGGAGGGCTAGGAAAAACAACACTAGCTAAACTCCTCTACAACGACCGTGAAGTGAAGGAGAAATTTGGTTTGAGGAGAGGATGGGCACATATCTCAAAAGATTTTGATGTTGTCACAGTCACTAAAACCATTCTTGAATCTTTTACTTCAAAAAGAAATGACACTGATGATCTGAATAATCTACAAGTGCAATTGCTGCAATGTTTAAGCAACACAAAGTTTTTGCTTGTATTGGATGATATGTGGGATGGGAAATATGTTGACTGCTGGAACAATTTGACCGACATCTTTAATGTCGGGGAAATAGGGAGTAAGATTATTATCACAACAAGAGATGAAAGAGTTGCAACAACCATGCAAACCTTTCTTCCGATCCACAAACTGGAACCTCTGCAGACCGATCATTGTTGGTCTTTGCTTGCCAAACATGCATTTCAAGCAAGTTATAATTATGAACAACGAGCCAACCTTGAAGTAATTGGCAAAGCAATTGCCAAAAAATGTCATGGCTTACCATTAGCTGCAGTTGCACTTGGGGGTCTACTTCGAATCAAATCGTCACCAAATGACTGGAATGATGTATTAAAAAGTAGTATTTGGGAATTGGCAAAAGATGTGCAACCTGCATTGCTATTGAGCTATCGTTATCTTCCTTCTTCTTTAAAAGGATGCTTTGCTTATTGTTCAATTTTTCCAAAGAACTCAATCTTAGAGAAAAAAATGGTAGTTCAGTTGTGGATTGCAGAAGGCTTAGTACCTCAACCCAAAAGTGAGAAAAGTTGGGAAAAAGTAGCTGAAGATTACTTTGATGAACTAGTGTTGAGGTCTCTCATACGTCAACGATCCATTGATGATGAGAAAATATGCTTTGAAATGCATGACCTCATCAATGATTTGGCTACAAAAGTTTCATCTCCATGCTGTATTAGGCTGGACGAACAAAAGCCACATGAAAGGGTACGTCATTTGTCATTCAATAGAGGGCCATATGACTCATATGATAAATTTGATAAATTGCTTGGATTAAAAGGTCTAAGAAGCTTTCTACCCTATACATCAGAAGAATTAGGGTGGTCCTATTGCATATCGGAGAAGTTAGTTTTTGACTTGCTGCCAACAATGATACAGTTGCACGTGTTGTCTCTATCACACTACTCAAATATTACCAAGTTGCCCAACTGTATTGGAAATTTGATATACCTGCGATACTTAAATCTCTCGCACACTAAGATTGAAATGCTGCCTTCTGAAACATGCAAGCTTCACAATCTTCAGACCTTATTGTTGTCACATTGCGATAGGCTCACTGAATTGCCGAAGGACATGGGAAAATTAGTTAATCTGCGCCACCTTGATATCAGAGGCACTCAACTGAAGGAAATTCCAGTACAAATATCCATACTAGAAAATCTCCAAACCTTGTCGGACTTTATTGTCAGCATGCAGGACGTGGGATTGAAGATTGCAGATTTAGGAAAATATTCCCATCTACGGGGAAGCCTTTCCATCTCACAAATTCAAAATGTAACTGATACATCCCATGCTTTTGAAGCAAAGTTGGAGATGAAAAAACAAATTGACAAGTTGGTACTACAATGGTCTGACACTACTCCTTCAAATTCAGAAACACAAAGTGTTGTATTTGAACGGTTGCGTCCCTCGACAAATTTGAAGAGTCTCATCATCAATGGTTATGGTGGGAACAACTTTCCAAATTGGTTGGGCGCTTCTTCATTTAGCAACATGGTGTGTTTGAGGATCTCTCATTGTGAAAATTGTTCCGGGCTGCCACCCCTCGGGCAATTAGCTAATCTGAAAGAACTCTTCATTGGCGAGATGAAATCAGTGAAGAGTGTTGGTGCTCAGTTCTATGGAAGTGGTTCTCCTTCATTTCAACCATTTCCCACTTTGGAGACTCTAGAATTTGATGCAATGCCGGAGTGGGAAGAATGGAAATTTACCGATGGCACAACTACAAAGTTTCCTCGTCTAACACGTTTGTCACTGCTACGTTGTCCAAAACTCCAAGGAAACATACCCTTTGGACAATTAGGTAAGCTAAAAGAACTTCACATTGAATTGATGGAATCATTGAAGACACTTGGTACTGAGTTCTACGGAAGTGGTAGTTCTCCTATGTTTCAATCATTCCCATCCTTGGAGACTTTGCAGTTTGTGAATATGCCAAAGTGGGAGGAATGGGAGCTGATCGGTGATACATATATAGTTTCCTAG 2847 0.3983 MATIVGEALLAASLEVLLEKIVSGEFGELFRSTKLDAALLGKLEITLVSLQAVLHDAEEKQITNPAVKQWLDMIRDAVFEAGDLFDEINTDALSRRVEVEYETRTATSQVLKKISSRFKRFNRKVNSKLQKLFERLEHLRKQNLKLKECVSSNVWHGTPTSSVMVDESAIYGRDNDRKKLKEFLLSEDGGDGGSKIGVISIVGMGGLGKTTLAKLLYNDREVKEKFGLRRGWAHISKDFDVVTVTKTILESFTSKRNDTDDLNNLQVQLLQCLSNTKFLLVLDDMWDGKYVDCWNNLTDIFNVGEIGSKIIITTRDERVATTMQTFLPIHKLEPLQTDHCWSLLAKHAFQASYNYEQRANLEVIGKAIAKKCHGLPLAAVALGGLLRIKSSPNDWNDVLKSSIWELAKDVQPALLLSYRYLPSSLKGCFAYCSIFPKNSILEKKMVVQLWIAEGLVPQPKSEKSWEKVAEDYFDELVLRSLIRQRSIDDEKICFEMHDLINDLATKVSSPCCIRLDEQKPHERVRHLSFNRGPYDSYDKFDKLLGLKGLRSFLPYTSEELGWSYCISEKLVFDLLPTMIQLHVLSLSHYSNITKLPNCIGNLIYLRYLNLSHTKIEMLPSETCKLHNLQTLLLSHCDRLTELPKDMGKLVNLRHLDIRGTQLKEIPVQISILENLQTLSDFIVSMQDVGLKIADLGKYSHLRGSLSISQIQNVTDTSHAFEAKLEMKKQIDKLVLQWSDTTPSNSETQSVVFERLRPSTNLKSLIINGYGGNNFPNWLGASSFSNMVCLRISHCENCSGLPPLGQLANLKELFIGEMKSVKSVGAQFYGSGSPSFQPFPTLETLEFDAMPEWEEWKFTDGTTTKFPRLTRLSLLRCPKLQGNIPFGQLGKLKELHIELMESLKTLGTEFYGSGSSPMFQSFPSLETLQFVNMPKWEEWELIGDTYIVS 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00320 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 432 IPR027417 -
Trre5g00320 948 Gene3D - 15 141 - -
Trre5g00320 948 FunFam Probable disease resistance protein At1g61300 156 326 - -
Trre5g00320 948 FunFam Probable disease resistance protein At1g63360 418 506 - -
Trre5g00320 948 Pfam Rx N-terminal domain 12 106 IPR041118 -
Trre5g00320 948 Gene3D - 335 416 IPR042197 -
Trre5g00320 948 Coils Coil 40 60 - -
Trre5g00320 948 PANTHER DISEASE RESISTANCE PROTEIN RP 40 896 IPR044974 GO:0006952
Trre5g00320 948 Gene3D - 417 507 IPR036388 -
Trre5g00320 948 Gene3D Ribonuclease Inhibitor 558 939 IPR032675 -
Trre5g00320 948 PRINTS Disease resistance protein signature 623 639 - -
Trre5g00320 948 PRINTS Disease resistance protein signature 198 213 - -
Trre5g00320 948 PRINTS Disease resistance protein signature 272 286 - -
Trre5g00320 948 PRINTS Disease resistance protein signature 372 386 - -
Trre5g00320 948 Coils Coil 122 149 - -
Trre5g00320 948 SUPERFAMILY L domain-like 496 937 - -
Trre5g00320 948 Gene3D - 147 326 IPR027417 -
Trre5g00320 948 Pfam NB-ARC domain 193 403 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00320 Trre-Chr5 1976978 1979824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00320 196 679 WRKY Transcription Factor Family AT5G45050 23.993 7.33e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00320 - - mtr:120575801 1326.23