Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00317 ATGAATGAAAACAAAGATCAACAAAACCCTCCAACAATATCACAAGAATCACCAAGAAAATTACAAAACATTAATATTATAGGAAGTGGAAGTACTACAAATGAGAGATTAAAAAGAGATGAATGGAGTGAAGGAGCAGTAACAACACTTCTTGAAGCATATGAATCAAAATGGATACTTAGAAACAGAGCAAAACTCAAAGGACAAGATTGGGAAGATGTTGCAAAATATGTTTCATCAAGATCAAATTCAACTAAGTCACCAAAGACACAAACACAGTGTAAGAATAAGATTGAGTCTATGAAGAAAAGGTATAGATCAGAATCAGCTAGTTCAGATGTTTCAGCTTGGCCTTTGTATTCAAGACTTGATCTTCTTCTTCGTGGGACAGGACAATTATCTACTACAACAGTAGTAGCTTCTCAATTGCAACATGTAAGTAATAATAATAATAATCATCATGGTTTGGTTTTGTTGGAACCTTCACTTGTTGTGTCACAACAAGGACAAGAAGAAGCTCATCAGCCACTAGCTCCTACTAGTGTTGCTAATCCACCAATTGCAACTGCACAAAATTCACATGGATCAAATGGGGTTGATAAATTTGCCAAGGAAGATGAGTTAGAAACTAAGTCGTCGGACCATGTCGAGAACAAGAATCCAGTGGACACAGATAGTAGCACGCCCGCGCTTTACAGTGAAAAAGACGAGCAAAGATCGAAAAAGAGGAGAATGAGAACAGAGAACAATAACAACAAGAGGCAAAAGAAAGAAGCAATGGGAATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTAGTTGTAAGGTCAGAACAAACAAGAATGGAGACATTGAAAGAGATTGAGAAGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAAATGGAAATCAAGAGAACTGAAATTCTTGCTAATACACAACTTGAGATTGCTAGGATATTTGCAAATGTTAATAATAAAGATGTTGATTCATCATTGAGAATTGGAAGAAGTTAA 1014 0.3659 MNENKDQQNPPTISQESPRKLQNINIIGSGSTTNERLKRDEWSEGAVTTLLEAYESKWILRNRAKLKGQDWEDVAKYVSSRSNSTKSPKTQTQCKNKIESMKKRYRSESASSDVSAWPLYSRLDLLLRGTGQLSTTTVVASQLQHVSNNNNNHHGLVLLEPSLVVSQQGQEEAHQPLAPTSVANPPIATAQNSHGSNGVDKFAKEDELETKSSDHVENKNPVDTDSSTPALYSEKDEQRSKKRRMRTENNNNKRQKKEAMGIAESIRWLAEVVVRSEQTRMETLKEIEKMRVEAEAKRGEMEIKRTEILANTQLEIARIFANVNNKDVDSSLRIGRS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00317 337 Coils Coil 284 304 - -
Trre5g00317 337 MobiDBLite consensus disorder prediction 167 259 - -
Trre5g00317 337 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 17 323 IPR044823 -
Trre5g00317 337 MobiDBLite consensus disorder prediction 199 221 - -
Trre5g00317 337 Pfam Myb/SANT-like DNA-binding domain 39 125 IPR044822 -
Trre5g00317 337 MobiDBLite consensus disorder prediction 1 33 - -
Trre5g00317 337 Gene3D - 42 107 - -
Trre5g00317 337 MobiDBLite consensus disorder prediction 1 34 - -
Trre5g00317 337 FunFam Trihelix transcription factor ASIL2 42 107 - -
Trre5g00317 337 MobiDBLite consensus disorder prediction 230 259 - -
Trre5g00317 337 MobiDBLite consensus disorder prediction 167 198 - -
Trre5g00317 337 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00317 Trre-Chr5 1954118 1961681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00317 29 137 Trihelix Transcription Factor Family AT3G14180 36.283 1.07e-17 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre5g00317 Myb_DNA-bind_4 9.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00317 - - gmx:100799917 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00317 5 1954118 1961681 Trre5g00317 5 1954118 1961681 ECH