Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00308 ATGGAAGAAGCTTTGCAAAGTGATGAAATACCAAAATTCAGAGATATTAGACGCTATTATTGTCCATACTGCGGTATCTGTAGATCCAAAAAAACCCTAATTACCTCACATGTAAATTCACAGCACAAGGAGGAGGTGGAGAAAGCAAAAGTTGAATCTGAACCTGATGCTGAGGGTGGTTTGAAATCTAATACTTGTGAGGAATGTGGTGCTAGTTTCAAAAAACATGCTTATTTGTTGCAGCATATGCAAAGTCATTCACTTGAGAGGCCATTTGTATGTAACCTTGAAGATTGTAAGGTGAGCTACAGAAGAAAGGATCATCTAAATCGTCACCTTCTACAGCATCAAGGGAAAACTTTTCAATGTCATATTGAGAATTGCAAAAGTGGCTTCTCATTGCAAAGCAATTTGAAAAGACATGTTGAAGAGATTCATGATGAAAATTCGACCCCTATTAGAACTGGTGAAAATCAGAAGCAGTTTGTTTGTCCTGAAATTGGCTGTGGAAAGGTTTTCAAATATGCATCACAGCTACAAAAACATGAAGATTCTCATGTTAAGTTGGATACGGTTGAAGTGGTGTGCTTAGAGCCTGGTTGCATGAAGTATTTCACCAATGCAGAGTGCCTTAAAGCTCATGTTAAGTCTTGCCATCAATATGTGACCTGCGACACTTGTGGTACTAAGCAACTGAAGAAGAACATGAAGAGGCATCTTCGCACACACGAAACCAGCACTTCATCAGAATCCTTTAAATGTCAATTTAAGGGTTGTGATTGCACATTCTCAACCAAATCTAATCTTCATACGCATGAGAAGGCAGTCCACTTCCAAGCAAAGCCTTTTGTGTGTGGTTTTTCTAATTGTGGAATGAGGTTTGCTTACAAACATGTGAGAGATAATCATGAAAAGACCGCTAAGCATGTTTTTACCCTTGGCGATTTTGAAGAAACTGATGAACAATTCAGGTCAAGGCCAAGAGGAGGGGTGAAGAGGAAATTTCCCACAGTAGAAATGTTGGTTAGGAAGAGAGTTACTCCACCTAGTCAATTGGAGAACTTGTTATTTATGCAGAATTGTGAGCAAGATGGATCATACTCCACTCTAGTCTAA 1116 0.3907 MEEALQSDEIPKFRDIRRYYCPYCGICRSKKTLITSHVNSQHKEEVEKAKVESEPDAEGGLKSNTCEECGASFKKHAYLLQHMQSHSLERPFVCNLEDCKVSYRRKDHLNRHLLQHQGKTFQCHIENCKSGFSLQSNLKRHVEEIHDENSTPIRTGENQKQFVCPEIGCGKVFKYASQLQKHEDSHVKLDTVEVVCLEPGCMKYFTNAECLKAHVKSCHQYVTCDTCGTKQLKKNMKRHLRTHETSTSSESFKCQFKGCDCTFSTKSNLHTHEKAVHFQAKPFVCGFSNCGMRFAYKHVRDNHEKTAKHVFTLGDFEETDEQFRSRPRGGVKRKFPTVEMLVRKRVTPPSQLENLLFMQNCEQDGSYSTLV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00308 371 Gene3D Classic Zinc Finger 151 222 - -
Trre5g00308 371 SMART c2h2final6 252 277 IPR013087 -
Trre5g00308 371 SMART c2h2final6 64 86 IPR013087 -
Trre5g00308 371 SMART c2h2final6 222 243 IPR013087 -
Trre5g00308 371 SMART c2h2final6 121 146 IPR013087 -
Trre5g00308 371 SMART c2h2final6 194 219 IPR013087 -
Trre5g00308 371 SMART c2h2final6 283 309 IPR013087 -
Trre5g00308 371 SMART c2h2final6 92 116 IPR013087 -
Trre5g00308 371 SMART c2h2final6 162 186 IPR013087 -
Trre5g00308 371 SMART c2h2final6 19 42 IPR013087 -
Trre5g00308 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Trre5g00308 371 ProSitePatterns Zinc finger C2H2 type domain signature. 164 186 IPR013087 -
Trre5g00308 371 FunFam Zinc finger 45-like 60 87 - -
Trre5g00308 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Trre5g00308 371 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Trre5g00308 371 SUPERFAMILY beta-beta-alpha zinc fingers 102 147 IPR036236 -
Trre5g00308 371 SUPERFAMILY beta-beta-alpha zinc fingers 63 116 IPR036236 -
Trre5g00308 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Trre5g00308 371 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Trre5g00308 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 191 IPR013087 -
Trre5g00308 371 PANTHER ZINC FINGER PROTEIN 6 354 - -
Trre5g00308 371 Gene3D Classic Zinc Finger 247 312 - -
Trre5g00308 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Trre5g00308 371 Gene3D Classic Zinc Finger 11 91 - -
Trre5g00308 371 SUPERFAMILY beta-beta-alpha zinc fingers 233 291 IPR036236 -
Trre5g00308 371 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Trre5g00308 371 Pfam Zinc finger, C2H2 type 162 186 IPR013087 -
Trre5g00308 371 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Trre5g00308 371 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Trre5g00308 371 Gene3D Classic Zinc Finger 92 116 - -
Trre5g00308 371 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Trre5g00308 371 Gene3D Classic Zinc Finger 117 150 - -
Trre5g00308 371 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Trre5g00308 371 SUPERFAMILY beta-beta-alpha zinc fingers 153 187 IPR036236 -
Trre5g00308 371 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00308 Trre-Chr5 1901049 1903366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00308 88 312 C2H2 Transcription Factor Family AT1G72050 51.449 4.88e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g00308 zf-C2H2 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00308 K09191 - gmx:100801812 583.563