Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00307 ATGTTCTCAGCTTCATCAGACGCTACTCTCACCTGTCCACGCTGTCGTCACGTCTCAACCGTCGGGAATTCGGTTTTAGCTTTACGGAAGAATTATGCGGTGCTTTCGTTAATCCATTCCGCCGTCGAAGCTTCTGCCGCCGGTGGCGGCAACCGAGGTTCGAATTTCGAATGTGATTTCACTGACGATGATGAAGACGGTGATGGTGAAGATGACGACGAGGATGACGAGGAGAAACGGCGGAGGAATAGCCGTGGCTCGCAGACTTCGAGTTCTGGTGGTTGTGCTCCGGTGATTGAGGTCGGTGTGCATCAGGATTTGAAATTAGTGAAGCGGATTGCGGAAGGAAGGAGAGCTGGTGTTGATATGTGGACGGCGGTGATCGGAGGTGGACGGTGTCGGCATCATGTGGCGGTGAAGAAAGCGGTGATAACTGAGGGAATGGATTTGGATTGGATGTTAGTGAAATTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTTTGTACTTTTCATGGTGCCATGAAGGTTGATGAGAGCTTGTGTCTTGTGATGGATAAATGTTATGGATCGGTTCGCTCTGAGATGCAGCGTAATGAAGGAAGACTCACATTGGAGCAAGTTTTAAGATATGGAGCAGACATTGCACGAGGGGTTGTTGAGCTTCACGCTGCCGGTGTTGTTTGCATGAATTTAAAGCCTTCAAATCTACTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCTGAGTGTGACTCCACAAAGATCCATTCCTGTATGGAATGTATAATGCTTAGCCCACATTATACAGCACCAGAGGCTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGGAATAGGTATATCTCCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGAGCCATTCCTTGGGCTGGTTTAAGTGCAGAGGAAATCTATCGAGCAGTTGTCAAGGCAAAGAAGCAGCCTCCACAATATGCTAGTGTGGTTGGTGGAGGAATTCCAAGGGAACTGTGGAAGATGATTGGAGAGTGCTTACAATTCAAACCATCTAAAAGGCCTACCTTCAATGCAATGCTGGCAATATTTCTCCGTCATTTGCAAGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGACCTTGTTAAGGGATCTGTATCAAATGTGACAGAGGCTTCCCCAGTACCTGAATTAGAAGTCCATCAGGACCCAAATCATCTTCATCGACTTGTGTCTGAAGGGGATGTCACTGGTGTTAGAGACTTTCTGGCAAAGGCTGCAACAGAAAACGAAAGCAACTACATGTCTTCTCTGTTGGAAGCTCAAAATGCTGATGGACAAACGGCTCTCCACTTGGCTTGTAGACGTGGCAGTGCAGAACTCGTTGAGACAATTCTGGAGTATGAAGAGGCTAATGTTGATGTCTTGGACAAAGATGGGGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGGTCCCATGAATGTGTGCGTAGCCTTATCAAAAGAAATGCTAGTGTGAAGTCACGATTGAGAGATGGGCTTGGCCCATCAGTAGCCCATGTTTGTGCTTATCATGGTCAGCCAGATTGTATGCGAGAGTTGCTTTTAGCGGGAGCTGATCCCAATGCCGTGGATGATGAAGGTGAATCAGTACTGCATAGGGCAATTGCCAAGAAGTTCACAGACTGTGCTATTGTGATAGTGGAAAATGGAGGCTGTAGATCGATGACCATCTTGAATTCAAAAAATCTGACACCACTGCACTTGTGTGTAGGGATGTGGAATGTTTCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTCTCGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAGTGAGGGGAGAGAGTTGGTGCGGATATTGCTTACAGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACAAATGATGTGGATTTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAACACTCGCAATGTGCACAATAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGAGCGGATTATAATTTGCAGGATGATGATGGTGATAATGCTTTCCATATAGCAGCAGAAACAGCAAAAATGATACGTGAAAATCTGGACTGGCTTATTGTTATGCTAAAGAATCCCGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACACTACGGGACATCTTAGAGGCTCTACCCCGAGAATGGATATCCGAAGATCTGATGGAGGCACTCTCAAATAGAGGCGTTCATTTATCTCCTACAATATTTGAAGTGGGAGATTGGGTGAAGTTTAAAAGAACTGTCACAACTCCAACACACGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGCTTTGTGCAAAGTATTCCAGACAGGGATAATCTAATTGTTTCATTTTGTTCGGGAGAGGTTCATGTTCTGCCACATGAAGTTGTAAAAGTTGTTCCATTGGACAGGGGGCAACATGTACAACTGAAAGGAGATGTAAAAGAGCCTAGGTTTGGTTGGCGCGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTAGACGATGATGGAATTCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGATTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAACATGGATTAGGAGCTGTTACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCTGACAGTAGCCTGTTAATTGAACTGAGCTATCTTCCAAATCCTTGGCATTGTGAACCAGAGGAGGTTGAGCATGTTCCTCCTTTCAGGATTGGTGATAAGGTATGTGTGAAGCGATCTGTCGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAACGATGGTCTCTTAGTAATAGAAATACCAAATCGACCCATACCATGGCAAGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTAAAAGCTTCAGTATCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGTGATGTGGGTGTTGCCTTTTGCTTCAGAAGCAAGCCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCTCCTTTTGAGGTGGGACAAGAAATTCATGTGATGCAATCTGTTAGTCAGCCACGGCTTGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCCCTCAATGCAAAGGTCACCGGTAGGCAGACCTTGTGGAAAGTATCTCCTGGAGATGCCGAACGACTTCCAGGGTTTGAGGTTGGGGATTGGGTACGCTCTAAACCAAGCCTTGGAAATAGACCTAGTTACGACTGGAATAGTGTTGGGAGAGAGAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGTTATTTAGAGTTGGCTTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACGGATGTTGAAAAGGTTCCTAGCTTGAAAGTTGGCCAGTATGTTAGGTTCCGAGTTGGTTTGGTTGAACCCAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGTATTATAACAAGTATTCATGCGGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGCCCGGACTGTGGAAAGGCGATCCTTCAGACCTGCAGGCAGAACAAATCTTTGAAGTGGGAGAGTGGGTGAGATTGAAAGAAAATGCAAATAATTGGAAATCAATTGTGCCAGGTAGTGTTGGCGTCGTTCAAGGAATAGGGTATGAAGGAGATGAAACTGACAGAAGTACTTATGTCGGCTTTTGTGGGGAGCAAGAGAAATGGGTAGGACCAAGTTCCCATCTTGAAAGAGTTGACAAACTCTTTGCAGGACAGAAAGTTAGAGTTAAACAATATGTAAAACAACCTAGATTTGGGTGGTCGGGGCACACGCATGCTAGTATTGGTACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACCCCAGCGGGCTCAAAAACATGGATGCTGGACCCATCAGAAGTGGAGGTCGTAGAAGAGAAGGAGCTTTGTATTGGAGACTGGGTAAGGGTTAGAGCATCAGTTTCAACTCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCGTTGGGGTTGTGCATCGGATGGAAGATGATAATTTATGGGTTTCATTCTGTTTTGTGGAGAGATTATGGCTTTGCAAGGCAAGTGAAATGGAACGGGTTAGGCCTTATAAAGTAGGGGACAAAGTAAGGATCAGAGATGGACTGGTATCGCCGCGGTGGGGATGGGGGATGGAAACACATGCCAGCAGGGGACAGGTTGTAGGAGTAGATGCAAATGGTAAACTAAGAATAAGGTTCCGTTGGAGGGAAGGTAGGCCTTGGATAGGAGACCCTGCTGATATTGCCCTTGATGAGAACTGA 4770 0.4606 MFSASSDATLTCPRCRHVSTVGNSVLALRKNYAVLSLIHSAVEASAAGGGNRGSNFECDFTDDDEDGDGEDDDEDDEEKRRRNSRGSQTSSSGGCAPVIEVGVHQDLKLVKRIAEGRRAGVDMWTAVIGGGRCRHHVAVKKAVITEGMDLDWMLVKLEDLRRASMWCRNVCTFHGAMKVDESLCLVMDKCYGSVRSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDLVKGSVSNVTEASPVPELEVHQDPNHLHRLVSEGDVTGVRDFLAKAATENESNYMSSLLEAQNADGQTALHLACRRGSAELVETILEYEEANVDVLDKDGDPPLVFALAAGSHECVRSLIKRNASVKSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKFTDCAIVIVENGGCRSMTILNSKNLTPLHLCVGMWNVSVVKRWVEVATSDEIAEAIDIPSPLGTALCMAAASKKDHESEGRELVRILLTAGADPSAQDSQNGRTALHTAAMTNDVDLVQVILAAGVDVNTRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALSNRGVHLSPTIFEVGDWVKFKRTVTTPTHGWQGARPKSVGFVQSIPDRDNLIVSFCSGEVHVLPHEVVKVVPLDRGQHVQLKGDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGAVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVPPFRIGDKVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLVIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDVGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMQSVSQPRLGWSNESPATVGKIVRIDMDGALNAKVTGRQTLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSLKVGQYVRFRVGLVEPRWGWRGAQPESQGIITSIHADGEVRVAFFGLPGLWKGDPSDLQAEQIFEVGEWVRLKENANNWKSIVPGSVGVVQGIGYEGDETDRSTYVGFCGEQEKWVGPSSHLERVDKLFAGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEEKELCIGDWVRVRASVSTPTHHWGEVSHSSVGVVHRMEDDNLWVSFCFVERLWLCKASEMERVRPYKVGDKVRIRDGLVSPRWGWGMETHASRGQVVGVDANGKLRIRFRWREGRPWIGDPADIALDEN 1589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat profile. 510 542 IPR002110 GO:0005515
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat region circular profile. 724 756 - -
Trre5g00307 1589 Pfam Ankyrin repeats (3 copies) 457 538 IPR002110 GO:0005515
Trre5g00307 1589 Pfam Ankyrin repeats (3 copies) 670 755 IPR002110 GO:0005515
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat region circular profile. 691 722 - -
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat profile. 545 577 IPR002110 GO:0005515
Trre5g00307 1589 SUPERFAMILY Protein kinase-like (PK-like) 104 412 IPR011009 -
Trre5g00307 1589 PRINTS Ankyrin repeat signature 477 492 IPR002110 GO:0005515
Trre5g00307 1589 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515
Trre5g00307 1589 Pfam Protein kinase domain 136 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00307 1589 Gene3D Transferase(Phosphotransferase) domain 1 190 420 - -
Trre5g00307 1589 FunFam E3 ubiquitin-protein ligase KEG 690 823 - -
Trre5g00307 1589 ProSiteProfiles Protein kinase domain profile. 107 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00307 1589 Gene3D - 430 544 IPR036770 -
Trre5g00307 1589 FunFam E3 ubiquitin-protein ligase KEG 191 407 - -
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat profile. 476 509 IPR002110 GO:0005515
Trre5g00307 1589 Pfam Ankyrin repeats (many copies) 548 596 IPR002110 GO:0005515
Trre5g00307 1589 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1588 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Trre5g00307 1589 SUPERFAMILY Ankyrin repeat 471 768 IPR036770 -
Trre5g00307 1589 Pfam Mind bomb SH3 repeat domain 1082 1200 IPR040847 -
Trre5g00307 1589 Pfam Mind bomb SH3 repeat domain 1208 1329 IPR040847 -
Trre5g00307 1589 Pfam Mind bomb SH3 repeat domain 832 950 IPR040847 -
Trre5g00307 1589 Pfam Mind bomb SH3 repeat domain 1335 1456 IPR040847 -
Trre5g00307 1589 Pfam Mind bomb SH3 repeat domain 1465 1583 IPR040847 -
Trre5g00307 1589 Pfam Mind bomb SH3 repeat domain 956 1076 IPR040847 -
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat profile. 691 723 IPR002110 GO:0005515
Trre5g00307 1589 Gene3D - 545 603 IPR036770 -
Trre5g00307 1589 Gene3D - 731 825 IPR036770 -
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat profile. 724 756 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 757 792 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 545 574 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 691 720 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 578 609 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 510 539 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 651 686 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 724 753 IPR002110 GO:0005515
Trre5g00307 1589 SMART ANK_2a 476 506 IPR002110 GO:0005515
Trre5g00307 1589 Gene3D - 604 730 IPR036770 -
Trre5g00307 1589 MobiDBLite consensus disorder prediction 46 96 - -
Trre5g00307 1589 FunFam E3 ubiquitin-protein ligase KEG 417 646 - -
Trre5g00307 1589 MobiDBLite consensus disorder prediction 59 75 - -
Trre5g00307 1589 ProSiteProfiles Ankyrin repeat region circular profile. 476 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00307 Trre-Chr5 1885507 1896980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00307 169 390 MAP Kinase Kinase Kinase AT2G31800 29.646 1.04e-16 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Trre5g00307 Pkinase 8.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00307 K16279 - gmx:100777576 2899.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00307 5 1885507 1896980 Trre5g00307 5 1885507 1896980 ECH