Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00303 ATGAATGTGTCAACATTTCCGGTAGTTGAAGGTGTTGAGACATTGGTGAACAATATCCATGAAAGTATTGTGCAACATGGACAGGAGGGTGTTGTCGATTATACACCATGCTTGGAGATGGAGTTTGAATCTGAAGTAGCGGCATATGAATTTTATAATGAGTATAGTAGGAGAATTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAAAAGATGGGATTTTGACTTCAAGAAGATTCACATGCTTTAAAGAGGGTAAACGGAGCGTTGACAAACGAGACCACTTGACAAAAGAGGGTAGGGCAGAAACCAGAACGGGTTGTCAAGCGCGTATGGTTATTTCACTTGATCGAAGTGTTGGAAAATACAAGGTTGTTGACTTTATAGCTCAACATAATCACGCTCTTCAACCACCAGGGTATGTTCATATGATTCGCTCTCATCGACGCTCACATGCATCTCAAGTTGTAGTGGCTGATGAATCTGGATTAAAACAAGATTTTCAAGAATATGTGTCCAAGCATGATGATGTAAAAGATATTATTAGTTGTTCAGGACAAGAAATTACGAATTATCTTCCAACTAAAAGGACGCGGTCGCTAATGTATGGTGAAGTGGGTGCGTTATTGATGTATTTCAAACGGCAAAGTGAAAATCCTTCATTCTTTTATGACTTCCAAATGGATGTTGAAGAGAAAATAACAAACATATTTTGGGCGGATGCACAAATGATAAATGATTATGAATACTTCGGCGATGTCATCACTTTTGATACAACATTCAAGTCAAATAAGGATTATCGGCCGTTGGGAGTATTTGTCGGACTAAATAATCACAAGCAAATGGTTGTTTTTGGTGCAACATTGCTATATGATGAAACAATCCCTTCTTTTCAATGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACTGATCAAGATGCTGCAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGGTTGTGTACTTGGCATATAAGAGAAAATGCCCTGAAGCATGTGAACCATCTATATCAAAAGGGTTCACAATTCTACTCAGATTTTGAAGCATGCATTGATGTATATGAAGAGGAAGGTGAGTTTTTGAAAGCATGGAATGTTTTACTTGTTGAACATAATGTTTCTGAAGATTCATGGCTCCATATAATTTTTCAACTGAAGGAAAAATGGGCATGGGCGTACCTTAAATTTTTTTTTACTGCGGGTATGAGATCTACTCAATTAAGTGAGAGTTTTAATGTTGAGATGAAAAATCATTTAAAGTCAGATTTAAACTTGGTGCAATTTTTCACACACTTTGAAAGGGTTGTCAATGGAATACGGAACAATGAGTCAGAAGCCGATTATGAGTCTAGACATGAGTTGCCTAAACTGAAAATGAGAAGGGTTCGTATGCTTATACAAGCCGGAAATATTTACACTCCAAAAATCTTTGAGGAATTTCAAGAAGAATTTGAGGAATATCAAGGGACTTGTGTAAAGAATTTGAAAGAAGGGTTGTATGTTGTTACAAATTATGATAACAGTAAGGAGCGAATGGTAATAGGGAATCTTGTGGATCAAAATGTTGCTTGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAATCATGCTTTAAAAGTTTTAGATGTTATGAATATTAAGCTAATTCCTCATCACTATATACTGAAGCGGTGGACAAGAGATGCAAGGTTGGGAAGTAATCGAGATTGGAAACGGCAACATGTTGAATTGGACATAAAAGCCCATTTTATGATGCGTTGCAATGAGTTATGTCGTCGAATGGTTAGATTGACCAACAAAGCATCAAAGTCTCATGAAACTTGCACATTTTTGTCCAAAGTATATGAAGAGTCCCATAAAATAATTGATGATATGTTGGCCAAAAAGTTTGTGGGCGGAGAATCACTTGAAATGTGTCATGCACCGGTAGCCATTGACAATGAAAAAAATGACAACAATGTGGACACTGTTGATGTTGGTGGGGAAAATGGTATAAAGAAGCTGAGATTGTTCAAATAG 2091 0.3678 MNVSTFPVVEGVETLVNNIHESIVQHGQEGVVDYTPCLEMEFESEVAAYEFYNEYSRRIGFGIRREYGNKSRKDGILTSRRFTCFKEGKRSVDKRDHLTKEGRAETRTGCQARMVISLDRSVGKYKVVDFIAQHNHALQPPGYVHMIRSHRRSHASQVVVADESGLKQDFQEYVSKHDDVKDIISCSGQEITNYLPTKRTRSLMYGEVGALLMYFKRQSENPSFFYDFQMDVEEKITNIFWADAQMINDYEYFGDVITFDTTFKSNKDYRPLGVFVGLNNHKQMVVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRENALKHVNHLYQKGSQFYSDFEACIDVYEEEGEFLKAWNVLLVEHNVSEDSWLHIIFQLKEKWAWAYLKFFFTAGMRSTQLSESFNVEMKNHLKSDLNLVQFFTHFERVVNGIRNNESEADYESRHELPKLKMRRVRMLIQAGNIYTPKIFEEFQEEFEEYQGTCVKNLKEGLYVVTNYDNSKERMVIGNLVDQNVACDCRKFETHGILCNHALKVLDVMNIKLIPHHYILKRWTRDARLGSNRDWKRQHVELDIKAHFMMRCNELCRRMVRLTNKASKSHETCTFLSKVYEESHKIIDDMLAKKFVGGESLEMCHAPVAIDNEKNDNNVDTVDVGGENGIKKLRLFK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00303 696 Pfam MULE transposase domain 256 350 IPR018289 -
Trre5g00303 696 SMART 26again6 544 571 IPR006564 GO:0008270
Trre5g00303 696 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 645 IPR031052 GO:0006355
Trre5g00303 696 Pfam FAR1 DNA-binding domain 50 140 IPR004330 -
Trre5g00303 696 ProSiteProfiles Zinc finger SWIM-type profile. 522 569 IPR007527 GO:0008270
Trre5g00303 696 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00303 Trre-Chr5 1872683 1874773 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre5g00303 MULE 8.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00303 - - psat:127085847 1125.92