Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00302 ATGAAGAAAACGTTTTCCACCAACAGCGCCACCAGGCGCGACTCATATTACCACCGTCAACCGCCGTCTCCCATCTTTCATCATCGGAACCCCAGATTCCATTCCAACCACCGCCATCTCCCTACTCATCCCCGCCTCCCCACTTTTACCATCAACCTCCGCTTCAACCACCGTATTCACCGCCGCGACCTCTGCCGCGACGACATCGAATCTCTGATAAAAAAATGCAAACCAAATCCCGACAATTTCACATTCAACACCAACGACAGCATCGCCGCTTCACTCAGTTTCAATCAGAAAACAGACGCGATCAACGCCGTTGTTTGGTTCTGGCAATCACGCCTCTCAGTGAATTCAAATCCAATCCACGATTTCACGCCGGAGTTCATAACGAACTCCGACAATGTCGAACTCGATGTTCGTCTTCGAAACGTGTTCATCAGCCACGTTAAGGAATTAATGAATGGAAACGAAGTGAATCGATGGATAAAAGAATGGGATCGATTATTGAAAGAGATTAATCATGTTAATAGCTTATTAAGTAAATCTTCTCCAATTAGGGTTCAAGAAGAGAATGTTGATAGAAAAAAAGCACTTGATGGTGAAAAGAGTTTAATTGAAAGGAGATTAAAGGAATTTGAATCTGCTATGGAGTGTATTTTGAAGTATTTAGAAGAGAAGAATAATGATGAAAATGGTGATTATGATTATGATTATGATTATGAAGTTGTTAATGTGTTTAGGTTTGGTGAAAAATTTGATTGGGAGAAGATTTATAATTTAATTGTTAGGGAACGTTGTAGATTTGAAGAAGGTTTGCCTATTTATGCTTATAGGAGGGAAATTCTTCAGCAAATACATCATCAAAAGATAACAGTGTTGATTGGAGAGACGGGTTCTGGGAAGAGTACTCAAATAGTGCAGTTTCTCGCTGATTCAGGTGTTGGGGCCAATGAGTCAATTGTATGCACTCAACCTCGCAAGATTGCTGCGAAATCATTGGCTGAAAGGGTCCGGGAGGAATGTGGTGGATGTTATGAAGACAATTCAATCAAGTGTTATTCCACGTTTTCATCTTGGAACAAGTTTGATTCCAGGATAACCTTCATGACAGATCACTGTTTATTACAACACTACATGAGTGATAAGAATTTGTCTGGGATCTCGTGTATTATAGTGGATGAGGCTCATGAAAGGAGTATAAATACTGATTTACTGTTGGCGTTAATAAAGAATTTACTTTGTAAGAGGGTTGAAATGCGGCTTATCATCATGTCTGCTACGGCTGATGCAAAGCAACTATCTGATTACTTCTATAGTTGTGGAATTTTTCGTGTCCTTGGGAGAAACTTCCCTGTGGAGGTGAGATATGTTCCTTCTGACTGTGGAGGACGTTCTGGTTCTGCTGTTGTGGACTCGTATGTTTCCGATGTTGTCAAAATGGCAACTGAAATTCACGCAACAGAGAATGAAGGAACTATTCTTGCCTTTCTTACCTCACAGTTAGATGTAGAATGGGCCTGTGAAAAGTTTGAATCCCGCTCTGCAGTTGCTTTACCCTTGCATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTTTTCCGGGACTATCCTGGAAAAAGAAAAGTGATATTTTCAACGAATGTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTCGCTTCGATCCTTGCAGTGGAATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAACGCGCTGGTCGTGCTGGGAGGACCGAGCCTGGTAGGTGCTATAGGCTGTACTCAGAAGCTGATTATCAATCTATGGAACTAAATCAAGATCCTGAGATACGAAGAGTTCATCTTGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGATTTCGATTTTGTGGATGCTCCGAGCCCTAGCTCTATTGAGAGGGCAATCAGGAATCTAATTCAATTAGGAGCCATTAAACTGAACAATAATGTTCATGAATTAACTTCTGAAGGTAGGTGCTTAGCAAGAATGGAGATTGAACCGAGGCTTGGTAAACTCATTCTTGGCTGTTTCCAATATGCTTTGGGCAGGGAAGGCATTGTCCTTGCTGTCATGATGGCCAATGCTAGAAGCGTATTTTGCAGAGTTGGTAATGAAGGTGATAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATTGCGATGGCGATCTTTTTACTCTTCTGTCTGTGTACAAAGAATGGGAAGCTCTGCCTCAAGATATGAGGAATAAATGGTGTTGGGAAAACAGCATCAATGCGAAATCTATGAGGAGATGCCAAAACACCTTTTTGGAGTTAGAATCTTGCCTAGAGAGCGAACTTGGCTTTGTTGTTCCAAGCTACTGGCGCTGGGACCCTCACATCCCTTCTATTCATGATAAGAATATGAAAATGGCTATATTGTCCTCACTATCCGAAAATGCAGCCATGTACTCTGGACGCAATCAACTTGGTTACGAAGTAGCTCAAACTGGGCAACTTGTTCAACTACATCCATCATGTTCCTTGCTCATATTTGCCCAGAGGCCTAGTTGGGTGGTTTTTTATGAGCTCCGTTCAGAGTCTAATGAATATTTGTTCTGTGTGAGTGCTATTGACTTTCAATCATTATACAGCCTTAAAACTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAGCGGAAGTTGCAAATGAGGACATTGTCTGGGTTTGGCAAACATGTTCTCAAGAGATTTTGTGGAAAAGGAAATTTGCTCGGTCATGTTTCTCGTATTAGGAAAGCTTGTATGGATGAACGAATCTTTGTTGAAGTGAATTTTGACGAGAACCAAGTTCAGTTGTATGCCAGTTCACATGATGTGAATGCAGCTAGTAAGTTGGTGAACGATGTTTTAGCATATGAGAAAAAGAGGTTATACAATGAATGTATGGAAAAATGTTTGTATCACGGGTCTGGTTCTTTATCACCCGTGGCTTTGTTTGGCTCTGGTGCTGAGATAAAGCATTTGGAGCTTGAGAAGCATTCGTTGAATGTTGATGTGTTTCACCCAAATGTAAATACAATTGATGAAATGGAGCTCTTGATGTTTTTTGAGAAAAATACTTCTGGTTGTATATGTGACATGCACAAGTTCACAAGCATGGTGAAGGATGTTGAGGATAAAGAAAAATGGGGCAGGATAACATTTCTGACCCCCAATGCTGCCAAAAGAGCTGCCGAGCTGGATGGAGAAGAGTTTCGTAACTCGCCCTTGAAAATAGTTCCTTCACAATCAGCTATGGGAGATAAAACATTTTCATTTCCTGCAGTTGAAGCAAGAATTTCTTGGCCTCGTAGGCCTACCAGAGCAATTGGCATGGTTATATGTGATAAAAATGATGTCAAATTCATCTTGAGAGATTTTAATAACCTTATAATAGATGATAGATATATTCGTTGTGCACCCAACGATAGATATATGGACAGAATTATGATAAGTGGGCTTGACAAAGAGCTTCCCGAGACTGAAATTTTGGATGTACTAAGATCTGCTACAAGTAGAAGGATTCAAGATTTTTTCTTTTTGAGGGGAGATGCTGTTGTTAATCCATCATGCAGTGTCATTGAAGAGGCACTCTTGAAAGAAATTTTACCCTTAATGCCCAAAAGGAACCCTCACATTAGTTCTTGCCGTGTTCAGGTGTTTCAACCTAAGCCGAAGGATTATTTGATGAGTGCTTTAATTCATTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGAACATTGATGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTCCCAGCAGTTGTTTCACAGCACCTTGATATTTTCTTCTCCAGTGTATCATGTGATTAAAGAACAACTGGAAAAAGTACTGGCAAGTTTCAAAAATTTAGAAGGTCTTCAGTGGAACCTAGACAGGACACCTAACGGTTCCCACCGAGTTAAGATAACAGCCAGTGCCACAAAGACGGTGGCAGAAGGTAGGAGACCTCTGGAAGAACTATGGAGAGGGAAAACTATTGTCCACGATAACCTCACCCCTTCTGTTCTACAGCTCATGTTGTCCAAAGATGGTTACACTCTTACAAGCTCAATACAGCAGGCGACAACAACTTACATTCAATTTGACAGGCGCAACCTGAATATACGGATATTTGGTTCGCCAGACAAGATTGCTTTGGCTGAGCAGAAGTTAATTCACTCTCTCTTGTCCCTCCATGAAGAAAAGGAGTTAGTAATCCATCTGAGAGGGAGGGGCCTACCTTCTGATTTAATGAAGCGAGTGGTTAAGAATTTCGGGCCAGATCTTCACGGACTAAAAGAGAAGGTACCTGGGGCCGATCTTAGGCTCAACACACGTGACCAGACAATCCTTCTTCATGGTAACAAGGAGTTCAAATCACGAGTAGAGGAAATAACTTTCGATATTGCACGCTTAAGTCATCAATTAATCGAGAGACTTGACACTGGACCTAGTTGTCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCAACTTGAAGGCTGCGGTCATTTGTTCTGCCGGTCGTGTTTGGTGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATACATTGTGCTCATCAGGGATGTGGAGATCTTATTTTGCTTGCAGATTTCAGAACTCTCCTGTCAAATGATAAGTTGGAGGAACTTTTCAGGGCATCATTGGGGGCTTTTGTAGCATCAAGTTCAGGAACTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAATCTATCGAGTTGCAGATCCCGACACTGCTAGTGTGCCATTTGTTTGTGGGGCATGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTACCATCCGTATGTTTCCTGTGAGAGATATCGAGAATTAAAGCATGACCCAGATTCATCGTCTCTGAGGGATTGGTGCAAAGGGAAAGAACACGTCAAGTGGTGCTTGGCGTGCGGCCATGTAATTGAAAAGGTGGACGGGTGCAATCACATTGAGTGCAAGTGTGGAAAACATATCTGTTGGGTTTGCTTGGAGTTCTTTACAAGCAGCGTTGAATGTTACGAGCACATGGACATACACGATAACTTTACGCTTGCATTGAATTTGTTTTCAGCAGACAGGAAAAACGACCGTGAGCTGTTGCAGGTATTTCTTGAGAAAATTGAAGAAGTGAAAGAAAAGTATAAGCAAGTGCTAACCAAAGTCACGCTCCTTCAAAGAGTATTCAATACTCCAGGATCTATTATAACCTTCAGATAG 5376 0.4161 MKKTFSTNSATRRDSYYHRQPPSPIFHHRNPRFHSNHRHLPTHPRLPTFTINLRFNHRIHRRDLCRDDIESLIKKCKPNPDNFTFNTNDSIAASLSFNQKTDAINAVVWFWQSRLSVNSNPIHDFTPEFITNSDNVELDVRLRNVFISHVKELMNGNEVNRWIKEWDRLLKEINHVNSLLSKSSPIRVQEENVDRKKALDGEKSLIERRLKEFESAMECILKYLEEKNNDENGDYDYDYDYEVVNVFRFGEKFDWEKIYNLIVRERCRFEEGLPIYAYRREILQQIHHQKITVLIGETGSGKSTQIVQFLADSGVGANESIVCTQPRKIAAKSLAERVREECGGCYEDNSIKCYSTFSSWNKFDSRITFMTDHCLLQHYMSDKNLSGISCIIVDEAHERSINTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSDYFYSCGIFRVLGRNFPVEVRYVPSDCGGRSGSAVVDSYVSDVVKMATEIHATENEGTILAFLTSQLDVEWACEKFESRSAVALPLHGKLSSEEQFHVFRDYPGKRKVIFSTNVAETSLTIPGVKYVIDSGLVKDSRFDPCSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQSMELNQDPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIERAIRNLIQLGAIKLNNNVHELTSEGRCLARMEIEPRLGKLILGCFQYALGREGIVLAVMMANARSVFCRVGNEGDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPQDMRNKWCWENSINAKSMRRCQNTFLELESCLESELGFVVPSYWRWDPHIPSIHDKNMKMAILSSLSENAAMYSGRNQLGYEVAQTGQLVQLHPSCSLLIFAQRPSWVVFYELRSESNEYLFCVSAIDFQSLYSLKTPPLFDVSKMEERKLQMRTLSGFGKHVLKRFCGKGNLLGHVSRIRKACMDERIFVEVNFDENQVQLYASSHDVNAASKLVNDVLAYEKKRLYNECMEKCLYHGSGSLSPVALFGSGAEIKHLELEKHSLNVDVFHPNVNTIDEMELLMFFEKNTSGCICDMHKFTSMVKDVEDKEKWGRITFLTPNAAKRAAELDGEEFRNSPLKIVPSQSAMGDKTFSFPAVEARISWPRRPTRAIGMVICDKNDVKFILRDFNNLIIDDRYIRCAPNDRYMDRIMISGLDKELPETEILDVLRSATSRRIQDFFFLRGDAVVNPSCSVIEEALLKEILPLMPKRNPHISSCRVQVFQPKPKDYLMSALIHFDGRLHLEAAKALENIDGKVLPGCLSWQKIKSQQLFHSTLIFSSPVYHVIKEQLEKVLASFKNLEGLQWNLDRTPNGSHRVKITASATKTVAEGRRPLEELWRGKTIVHDNLTPSVLQLMLSKDGYTLTSSIQQATTTYIQFDRRNLNIRIFGSPDKIALAEQKLIHSLLSLHEEKELVIHLRGRGLPSDLMKRVVKNFGPDLHGLKEKVPGADLRLNTRDQTILLHGNKEFKSRVEEITFDIARLSHQLIERLDTGPSCPICLCEVEDGYQLEGCGHLFCRSCLVEQCESAIKNQGSFPIHCAHQGCGDLILLADFRTLLSNDKLEELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPDTASVPFVCGACYSETCTRCHLEYHPYVSCERYRELKHDPDSSSLRDWCKGKEHVKWCLACGHVIEKVDGCNHIECKCGKHICWVCLEFFTSSVECYEHMDIHDNFTLALNLFSADRKNDRELLQVFLEKIEEVKEKYKQVLTKVTLLQRVFNTPGSIITFR 1791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00302 1791 Pfam Helicase associated domain (HA2) 664 758 IPR007502 GO:0004386
Trre5g00302 1791 Pfam Helicase conserved C-terminal domain 485 602 IPR001650 -
Trre5g00302 1791 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 389 398 IPR002464 -
Trre5g00302 1791 Gene3D - 647 751 - -
Trre5g00302 1791 CDD DEXHc_RHA-like 288 446 - -
Trre5g00302 1791 Gene3D - 259 449 IPR027417 -
Trre5g00302 1791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 447 IPR014001 -
Trre5g00302 1791 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1655 1733 - -
Trre5g00302 1791 SUPERFAMILY RING/U-box 1526 1602 - -
Trre5g00302 1791 SMART ha2_5 663 759 IPR007502 GO:0004386
Trre5g00302 1791 FunFam RBR-type E3 ubiquitin transferase 646 752 - -
Trre5g00302 1791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 643 IPR001650 -
Trre5g00302 1791 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 625 668 - -
Trre5g00302 1791 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 828 903 IPR011709 -
Trre5g00302 1791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 782 IPR027417 -
Trre5g00302 1791 PANTHER ATP-DEPENDENT RNA HELICASE 267 909 - -
Trre5g00302 1791 CDD BRcat_RBR 1609 1662 - -
Trre5g00302 1791 SUPERFAMILY RING/U-box 1681 1729 - -
Trre5g00302 1791 Gene3D - 450 622 IPR027417 -
Trre5g00302 1791 SMART ultradead3 271 456 IPR014001 -
Trre5g00302 1791 MobiDBLite consensus disorder prediction 1 28 - -
Trre5g00302 1791 Pfam DEAD/DEAH box helicase 279 434 IPR011545 GO:0003676|GO:0005524
Trre5g00302 1791 ProSitePatterns Zinc finger C2H2 type domain signature. 1712 1732 IPR013087 -
Trre5g00302 1791 ProSiteProfiles TRIAD supradomain profile. 1523 1737 IPR044066 -
Trre5g00302 1791 ProSiteProfiles Zinc finger RING-type profile. 1527 1569 IPR001841 -
Trre5g00302 1791 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 256 449 - -
Trre5g00302 1791 SUPERFAMILY RING/U-box 1609 1665 - -
Trre5g00302 1791 SMART ibrneu5 1660 1725 IPR002867 GO:0008270
Trre5g00302 1791 SMART ibrneu5 1594 1659 IPR002867 GO:0008270
Trre5g00302 1791 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 450 622 - -
Trre5g00302 1791 Pfam IBR domain, a half RING-finger domain 1603 1659 IPR002867 GO:0008270
Trre5g00302 1791 SMART helicmild6 505 603 IPR001650 -
Trre5g00302 1791 Gene3D - 1654 1782 - -
Trre5g00302 1791 ProSitePatterns Zinc finger RING-type signature. 1543 1552 IPR017907 -
Trre5g00302 1791 MobiDBLite consensus disorder prediction 1 16 - -
Trre5g00302 1791 Coils Coil 1753 1773 - -
Trre5g00302 1791 CDD SF2_C_RHA 451 611 - -
Trre5g00302 1791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1524 1603 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00302 Trre-Chr5 1846156 1854639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00302 1543 1715 ARIADNE family AT3G27710 30.286 9.54e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00302 K12818 - gmx:100810008 2453.71