Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00299 ATGCCTTCCAAAACTCACCAAAACGAAAAAGAAGAAAAATCACCGTACAAAATAGAACAACAACAAGAAGAAGAAGATGTAGAAGAAGAAGAAGAAGAAGAAGAACAAGTATGGGATGATTGGGAAGGAGACGAAGGAGATTCTGAATTCATCTGTCTCTTCTGTGATTCCAATTACACTTCCTGCACTTCTTTATTCCAACATTGTTCTTCAATTCACCACTTCGATTTTCATGCTGTTACAAATTCTCTTCATTTGGATTTCTATGCTTCCTTCAAGCTCATCAATTACATTCGCTCGCAGGTGGCGGAGAGCAGATGTTGGAGTTGTGGGTTAGCTTGTCAGTCCAAACATGATTTGCAGAATCACTTGCATGATGTAACTGACTTTAGTAGTATTAAGCCTTTGTGGGATGATGATAGATATCTAAAACCTTTCTTGCAAGATGATTCATTACTGTACAACTTTGGTGAATTTGAAGAAGGTGAAGATGAACAAACTTCAGTCATGGATGAAGATCTTGTTACAGATTTGAAGAATGCAATTTACGGTGATGATCAAGATGCCTTGAAAAAATTGATAGTCAATGAGACAGCTTCTGTTTCAGATGATCATTCAAGCTTGCCCAGTTCTTCAGATAAGGAACTTGTTAATGGGAAGGACTCAAGAGGATGTATTTCATCAATTGATAAGGATCCGGAAGAAGGGTTTTTGATGGGTAATCCTCAGAATCACATTGTAACACATATTAGGAAGGTCAATGAAAGTTATTTTGGGTCTTACAGTTCATTTGGCATCCATCGGGAGATGTTAAGTGATAAGGCTAGAATGGATGCTTATGGCCAAGCAATTTTGAAGAATCCCTCTTTGCTAAATGGTGCTGTGGTTATGGATGTAGGTTGTGGAACTGGCATTCTCAGCCTTTTTTCAGCTCAAGCAGGGGCTTCAAGGGTCATTGCAGTTGAGGCTAGTGCCAAGATGGCAGCAGTGGCAACTCAGGTTGCAAAAAATAACGGTCTTTTGCTGAGTAAAAGCGAAACTAGAGTCAATGGCAACAACAAAGGAGTCGTAGAAGTGGTTCATGGCATGGTTGAAGAAATTGATAAAATTGTTGAACTTCAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGGTATTGCTTGCTGTATGAATCTATGCTTGGTTCAGTGCTTTATGCACGTGACCGGTATTTGAAGCCTGGGGGTGCCATTCTTCCCGACACAGCAACTATTTTTGTTGCAGGATTTGGAAAAGGAGGTACAAGTCTTCCATTTTGGGAGAACGTGTGTGATTTTGACATGTCTTGCATTGGGGAGGAACTTGTCATAGACGCTGCCCGATATCCTATAGTTGATGTCATAGACCATCAAGATTTAGTTACCAGTTCTACTATTCTTCAGACCTTTGACTTGGCTACCATGAAGCCCCATGAAGTGGATTTCACTGCAACAGCTTCTTTGGAACCAAAATTGAGTGCTTCAGAAAACGAAAAAACACATTTGAATTCTAAAACAAGTTGGTGCTATGGAGTTGTCTTATGGTTTGATACTGGGTTTACAACTAGATTCTGCCGGGAAACACCAACTGTGCTGTCAACATCTCCTTACATTCCAAAAACACATTGGTCACAGACAATATTAACATTTCGGGAACCCATTGCCATGGGATTGGGCGTAGAAAATGGGGGAAATTCAGAAACGATAGGCACAGAAGGCTACCCTGCCGTGAAGATTGATTTGCGTGTCAGCATTGTCCGTTCTACTGAGCATCGCAGCATCGACATTTCCATGGAAGCTGCTGGTGTTGGTCCTGATGGTCGGAGACGCAGTTGGCCAGCTCAACTTTTTTCATTGCAGTAG 1887 0.4107 MPSKTHQNEKEEKSPYKIEQQQEEEDVEEEEEEEEQVWDDWEGDEGDSEFICLFCDSNYTSCTSLFQHCSSIHHFDFHAVTNSLHLDFYASFKLINYIRSQVAESRCWSCGLACQSKHDLQNHLHDVTDFSSIKPLWDDDRYLKPFLQDDSLLYNFGEFEEGEDEQTSVMDEDLVTDLKNAIYGDDQDALKKLIVNETASVSDDHSSLPSSSDKELVNGKDSRGCISSIDKDPEEGFLMGNPQNHIVTHIRKVNESYFGSYSSFGIHREMLSDKARMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFSAQAGASRVIAVEASAKMAAVATQVAKNNGLLLSKSETRVNGNNKGVVEVVHGMVEEIDKIVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRYLKPGGAILPDTATIFVAGFGKGGTSLPFWENVCDFDMSCIGEELVIDAARYPIVDVIDHQDLVTSSTILQTFDLATMKPHEVDFTATASLEPKLSASENEKTHLNSKTSWCYGVVLWFDTGFTTRFCRETPTVLSTSPYIPKTHWSQTILTFREPIAMGLGVENGGNSETIGTEGYPAVKIDLRVSIVRSTEHRSIDISMEAAGVGPDGRRRSWPAQLFSLQ 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00299 628 FunFam Protein arginine N-methyltransferase 6 250 415 - -
Trre5g00299 628 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 254 580 IPR025799 GO:0016274|GO:0018216
Trre5g00299 628 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 260 564 IPR029063 -
Trre5g00299 628 Coils Coil 17 37 - -
Trre5g00299 628 Pfam C2H2 type zinc-finger (2 copies) 52 126 IPR041661 -
Trre5g00299 628 SUPERFAMILY beta-beta-alpha zinc fingers 33 166 IPR036236 -
Trre5g00299 628 Gene3D - 418 620 - -
Trre5g00299 628 CDD AdoMet_MTases 296 414 - -
Trre5g00299 628 MobiDBLite consensus disorder prediction 1 41 - -
Trre5g00299 628 MobiDBLite consensus disorder prediction 22 41 - -
Trre5g00299 628 Pfam Methyltransferase domain 296 411 IPR041698 -
Trre5g00299 628 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 53 610 IPR025799 GO:0016274|GO:0018216
Trre5g00299 628 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g00299 628 Gene3D Vaccinia Virus protein VP39 246 415 IPR029063 -
Trre5g00299 628 MobiDBLite consensus disorder prediction 202 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00299 Trre-Chr5 1824545 1828523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00299 28 627 C2H2 Transcription Factor Family AT3G12270 55.397 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00299 K11436 - gmx:100781879 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00299 5 1824545 1828523 Trre5g00299 5 1824545 1828523 ECH