Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00297 ATGAGTGAGGTTTTGAAGAAGGGGGTAATCCAGAAGTCGCCTACTTTGCAGGGGAAAATGGGTCGTAGAAGAATATCTATGGAACTCATTCAAAGCGAGAAGTTGAGAAAGATAACATTTCAAACGAGAGTGAAAGGCTTATTAAAAAAAGCGGATGAACTTTCCACTCTTTGTGAAATTGACGTTTGTGTAATTCTCTATGCTCCCAATTTTGAAGGTCAAGGATATGATGAACCTAAAACATGGCCTAAAGAGACAGAAGAGGTACAAAGAATCCTTCAAAAGTACCACAACACAACAATTGATCGACCTCCTAAGATCTATCATGGTCAAGAGTATTTTAAAGAAAGAATGAAAAAAGTCGAATTCGACATTTCCAAAGTGCGCAAAGAAATGTTAAGGATCATGTATCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGCGGAACAAATGAGGTTATTGGCTAGCATATTGGATACTAAGCTTGATGCTTGTAATCATAAGATGAATATGCTAAAAGGAGATATTAAGGGAAAAACAATAGTTCATGAATCATACAAGGTTGATAAACCTGATACTTCCTATCTGACCTCAACTCCAAATAGCTACTTCAATCTCATGCAAAATAACATGTCTCAAACACAAATTTATCCTCAATTGATGAATATTATTGACAAAAATCCCATTGGGTTTTGGCCGCTTCAATTGGGACAAAGCTCTCAACCTTCTTCGATGATTTCTATTGCACAAAATTCCTATCAGGTGGAGTCTGATGAAGGTAGATATCCTTACGAGCAAGTCAATGGTAATTGTTCTAATTGGGTTGATGCTAATACTTTCTACGACCCAAAAATTGGTATGAAAAATAACCATGAAGGTGAAAATGATGAAAAATTGTCACCATACTATTACAATGAAAATGCAATGACAATGCAATCATATCCTTTTGATATGCATACTCTACCTTTCCAAAATCTTCCAAACCTACCACCACATGGATCATATCAACTTGATGGATTCTATGATACAAATATTTTTCAAGCTCAAATGTTCAACAACTACACGGATGGAAGGAAGTAG 1083 0.3583 MSEVLKKGVIQKSPTLQGKMGRRRISMELIQSEKLRKITFQTRVKGLLKKADELSTLCEIDVCVILYAPNFEGQGYDEPKTWPKETEEVQRILQKYHNTTIDRPPKIYHGQEYFKERMKKVEFDISKVRKEMLRIMYPTWDESFNSLGAEQMRLLASILDTKLDACNHKMNMLKGDIKGKTIVHESYKVDKPDTSYLTSTPNSYFNLMQNNMSQTQIYPQLMNIIDKNPIGFWPLQLGQSSQPSSMISIAQNSYQVESDEGRYPYEQVNGNCSNWVDANTFYDPKIGMKNNHEGENDEKLSPYYYNENAMTMQSYPFDMHTLPFQNLPNLPPHGSYQLDGFYDTNIFQAQMFNNYTDGRK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00297 360 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Trre5g00297 360 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Trre5g00297 360 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Trre5g00297 360 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Trre5g00297 360 Gene3D - 33 122 IPR036879 GO:0003677|GO:0046983
Trre5g00297 360 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Trre5g00297 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 195 - -
Trre5g00297 360 SUPERFAMILY SRF-like 21 111 IPR036879 GO:0003677|GO:0046983
Trre5g00297 360 CDD MADS_SRF_like 21 99 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g00297 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00297 Trre-Chr5 1820483 1822545 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00297 20 250 Type I MADS-box Gene Family AT5G55690 27.586 1.12e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g00297 SRF-TF 9.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00297 - - tpra:123913303 501.901