Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00295 ATGGGTCGTGGAAGAATATCTATGGATCTCATTCAAAAGGAGAAGTCAAGAAAGTTAACATTTCATAAGAGAAAGAAGGGATTACTGAAAAAAGCGCATGAACTTTCCACTCTTTGTGGTGTTGACGTTTGTATGATTCTCTATGCTCCCAATTTTGAAAGTCAAGGATATGATGAACCTGAAATATGGCCTGATAAAAACCCAGAAAAGGTACAAAGAATCCTTCAAAAGTACAGCAACACAACAATTGATCGACGTCCTAAGATCTATGATGCTCAAGAGTATTTTAAAGAAAGGAAGAAAAAAGTTGAATTTGATATTTTCAAAGTGCGCAAAGGGATGTTAAAGATCATGTATCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGATGAGCAAATGAGATTATTTGCTAGCACATTGGATGCTAAACTTGATGCTTGCAATCAAAAGATGAATAAGCTAAAAGGAGATCTTAAGGGAAAAACAATAGCTCGTGAATCATACAAAGTTGATAAACCTAATACTTCCTATTTGACCTCAACTCCAAATAGCTACTTCAATCTCATGCAAAACAACATGTCTCAAGCAAAAATTTACCCTCCATTGATGAATATTAGTGACAAAAACTCCTTAGGGTTTTGGCCACTTCATTTGGGACAAAGCTCTCAACCTTCTTCGACGCTTTCTAGTGCACTAGGTTCCTACCAGGTGGAGTCTGATGAGGGTAGATATACACAATCTTACCCCTGCAATCAAGTCGATACTAATTGGGCTAAATGGGTTAGTCATGTTGATGCTAATATTTTCCATGATTCAAAATTCGACGTCAAAAAGAAGGATGAAGTTGAAAATGTTGAAAATTTATCACCATACTATTACAATGGAAATGCAATGACAATGCAATCATATCCTAATGGTATGCATACTCTTCCTTTGCAAAATCTTCCAAGCCTACCACCACAAGGATATCAACTTAATCCATTCTATGATATCGATATTCTTCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTAG 1047 0.361 MGRGRISMDLIQKEKSRKLTFHKRKKGLLKKAHELSTLCGVDVCMILYAPNFESQGYDEPEIWPDKNPEKVQRILQKYSNTTIDRRPKIYDAQEYFKERKKKVEFDIFKVRKGMLKIMYPTWDESFNSLGDEQMRLFASTLDAKLDACNQKMNKLKGDLKGKTIARESYKVDKPNTSYLTSTPNSYFNLMQNNMSQAKIYPPLMNISDKNSLGFWPLHLGQSSQPSSTLSSALGSYQVESDEGRYTQSYPCNQVDTNWAKWVSHVDANIFHDSKFDVKKKDEVENVENLSPYYYNGNAMTMQSYPNGMHTLPLQNLPSLPPQGYQLNPFYDIDILQAHMFNNYMDGRK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00295 348 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g00295 348 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre5g00295 348 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Trre5g00295 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Trre5g00295 348 PANTHER MADS BOX PROTEIN 3 153 - -
Trre5g00295 348 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g00295 348 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g00295 348 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g00295 348 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g00295 348 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00295 Trre-Chr5 1813813 1815042 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00295 1 131 Type I MADS-box Gene Family AT5G55690 43.066 2.73e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g00295 SRF-TF 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00295 - - tpra:123913303 553.903