Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00293 ATGGGTCGTGGAAGAATATCTATGGATCTCATTCAACAGGAGAAGTCAAGAAAGTTAACATTTCATAAGAGAAAGAAGGGATTATTGAAAAAAGCGCATGAACTTTCCACTCTTTGTGGTGTTGACGTTTGTATAATTCTCTATGCTCCCAATTTTGAAGGTCAAGGATATGGTGAACCTGAAATATGGCCTGATAAAAACCCAGAAAAGGTACAAAGAATCCTTCAAAAGTACCGCAACACAACAATTGATCGACGTCCTAAGATCTATGATGCTCAAGAGTATTTTAAAGAAAGGATGAAAAAAGTCGAATCTGATATTTTCAAAGTGCAAAAAGAAATGTTAAAGATCATGTATCCAACTTGGAATGAATCTTTCAATTCTCTTGGAGATGAGCAAATGGGGTTATTTGTTAGCACATTGGATGCTAAACTTGATGCTTGCCATCAAAAGATGAATATGCTAAAAGGAGATCTTAAGGGAAAAACAATAGCTCGTGAATCATACAAAGTTGATAAACCTAATACTTCCTATTTGACCTCAACTCCAAATAGCTACTTCAATCTTATGCAAAACAACATGTCTCAAGCACAAATTTACCCTTCATTGATGAATATTAGTGACAAAAACTCCTTAGGGTTTTGGCCACTTCATTTGGGACAAAGCTCTCAACCTTCTTCGATGCTTTCTAGTGCACAAGGTTCCTATCAAGTGGAGTATGATGAAGGTAGATATACACAATCTTACCCCTACAATCAAGTCGATACTAATTGGGCTAAATGGGTTAGTCATATTGATGCTAATATTTTCCATGATTCAAAATTCGACATCAAAAAGAAGGATGAAGTTGAAAATGTTGAAAATTTATCACCATACTATTACCGTGGAAATGCAATGACAATGCAATCATATTCTAAGGGTATGCATACTCTTCCTTTGCAAAATCTTCCAAACCTACCACCACAAGGATATCAACTTAATCCATTCTATGATATCGATATTCTTCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTAG 1047 0.3543 MGRGRISMDLIQQEKSRKLTFHKRKKGLLKKAHELSTLCGVDVCIILYAPNFEGQGYGEPEIWPDKNPEKVQRILQKYRNTTIDRRPKIYDAQEYFKERMKKVESDIFKVQKEMLKIMYPTWNESFNSLGDEQMGLFVSTLDAKLDACHQKMNMLKGDLKGKTIARESYKVDKPNTSYLTSTPNSYFNLMQNNMSQAQIYPSLMNISDKNSLGFWPLHLGQSSQPSSMLSSAQGSYQVEYDEGRYTQSYPYNQVDTNWAKWVSHIDANIFHDSKFDIKKKDEVENVENLSPYYYRGNAMTMQSYSKGMHTLPLQNLPNLPPQGYQLNPFYDIDILQAHMFNNYMDGRK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00293 348 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g00293 348 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g00293 348 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g00293 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Trre5g00293 348 PANTHER MADS BOX PROTEIN 3 149 - -
Trre5g00293 348 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre5g00293 348 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Trre5g00293 348 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g00293 348 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre5g00293 348 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00293 Trre-Chr5 1804619 1805665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00293 1 131 Type I MADS-box Gene Family AT5G55690 43.284 4.57e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre5g00293 SRF-TF 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00293 - - tpra:123913303 539.65