Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00278 ATGAATGGTTTTCGGAACAGTTTAGGAACCGTGTTGAGGTGCCGCCTCCTACTCCTCCTCCTCCTCTTCTCCTTCTCTGTCCCCTATTATTTCTTCAATTGTGTTGCGTTAAATTTCTCCGCCGACCCAGTGATAGCGATCCATCGCCGTAGAATACATGTTAACCAAGATCACGCAACTTTCGCCGAGCTTATGGGCGTATTAGAAGAACGGCAAGATCAAAAGGTGCATGTAATACATGAGTGGGTATGGGCTGGTACTCCGAATGAGGGCGCTGCTTGGCTTCGTTTGCAGAGATTGGCCGATACATTGCATCGAATCCTTTTGATACCAGTCACCGGAGGAGTAATGGTTGGCATGATGTGTGGTTTACTTGAAATATTGGACCAAATAAAGCAGGCAAGTTATTCCCCTCAAAGACAAGGTTTTGACCTGCTTGCAGGAATCTATCCAACGGTAAAGGCTATTCAGGCTGCAGTCACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGTCCTAGTGTTGATATTGGAAAGTCTTGTGCCAATGGATTCTCATTAATGATGGAAAACAACAGAGAAAGAAAAATAGCACTTGTTGCAGCTGGTGCAGCAGCTGGAATTTCTTCAGGCTTCAATGCAGCAGTTGCTGGTTGTTTCTTCGCTATTGAAACTGTGCTGAGGCCACTCCGTGCAGAAAATTCTCCTCCATTTACAATTACCATGATTAAATTGGCTTCTGTTATTTCGTCAACTGTATCAAATGTCTTACAGGGAACCCAATCAGCTTTTACAGTGCCAGAGTACGAGTTGAAATCTGCTGCTGAGCTACCTTTATACCTAATATTGGGAATGCTATGTGGTTGTGTAAGCGTGACAATGACTCGTTTGGTTGCTTGGTTCACCAAATTTTTCGAGGTTATCCAGGAGAAATTTGGCCTTCCTACTGTAGTCTTCCCTGCCATTGGTGGTTTAGGAGCTGGAATCATTGCCCTTAAATATCCCGGAATATTATGCTGGGGTTTCACAAATGTGGAAGAAATTCTACGTACTGGCAAGAGTGCTTCCACTCCTGGAATATGGCTTCTGACTCAATTAGCAGGTGCTAAGGTTATTGCCACAGCTCTTTGTAAGGGGTCTGGGCTGGTAGGTGGTCTTTATGCAGTTGGTGCGGTGTTTGGAGGATTTGCTGCAGAAATTATCAATTCAGCAATTCCTGGAAATGCCGCTGTTGCTCAACCCCAGGCCTATGCTCTGCTTCCATGGCAAGGAAGATATACATTAGGGGAGGACTTGGTGTTGGTGCTTTCCAGAGGATTTATGGTGGAAGCCAGAGGAACGAACGTGAATATCATTGAGATGGACACCAAGGGCGGCAGGAAAATCACTTCCAATGGAAGGAGGGATTTGGACCAAGTTGCCGGACGGATTGCGGTTGCTCCTTGA 1446 0.4571 MNGFRNSLGTVLRCRLLLLLLLFSFSVPYYFFNCVALNFSADPVIAIHRRRIHVNQDHATFAELMGVLEERQDQKVHVIHEWVWAGTPNEGAAWLRLQRLADTLHRILLIPVTGGVMVGMMCGLLEILDQIKQASYSPQRQGFDLLAGIYPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPLRAENSPPFTITMIKLASVISSTVSNVLQGTQSAFTVPEYELKSAAELPLYLILGMLCGCVSVTMTRLVAWFTKFFEVIQEKFGLPTVVFPAIGGLGAGIIALKYPGILCWGFTNVEEILRTGKSASTPGIWLLTQLAGAKVIATALCKGSGLVGGLYAVGAVFGGFAAEIINSAIPGNAAVAQPQAYALLPWQGRYTLGEDLVLVLSRGFMVEARGTNVNIIEMDTKGGRKITSNGRRDLDQVAGRIAVAP 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00278 481 CDD Voltage_gated_ClC 76 420 - -
Trre5g00278 481 PRINTS Chloride channel signature 154 173 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00278 481 PRINTS Chloride channel signature 205 224 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00278 481 PRINTS Chloride channel signature 378 398 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00278 481 Pfam Voltage gated chloride channel 147 420 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre5g00278 481 SUPERFAMILY Clc chloride channel 68 420 IPR014743 -
Trre5g00278 481 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 75 419 - -
Trre5g00278 481 Gene3D Clc chloride channel 69 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00278 Trre-Chr5 1700805 1711294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00278 449 481 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 78.788 7.38e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00278 K03281 - gmx:100787625 544.273