Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00271 ATGGCATCAATGTCAGCATCTGGTTCATGGAGTGTTAAGGACAACAAAGCATTTGAAAGGGCATTAGCTGTTTTTGATAAGGACACACCTGATCGTTGGTCCAATGTTGCTCAAGCTATTGGTGGAGGGAAGACTCCTGAAGATGTTAAGAGACATTATGAACTTCTTCTTAGGGATATTAGGCACATTGAATCAGGTCAAGTTCCATTCCCAAATTACAAGAATGTTGGAACCTTTGATGAGGAGAAAAGGATGAGAAACCTGAAGCTCAAGTGA 276 0.4094 MASMSASGSWSVKDNKAFERALAVFDKDTPDRWSNVAQAIGGGKTPEDVKRHYELLLRDIRHIESGQVPFPNYKNVGTFDEEKRMRNLKLK 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00271 91 CDD SANT 9 57 IPR001005 -
Trre5g00271 91 SMART sant 6 59 IPR001005 -
Trre5g00271 91 FunFam Transcription factor SRM1 2 70 - -
Trre5g00271 91 ProSiteProfiles SANT domain profile. 5 61 IPR017884 -
Trre5g00271 91 Gene3D - 2 70 - -
Trre5g00271 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 81 IPR044636 GO:0003700
Trre5g00271 91 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Trre5g00271 91 SUPERFAMILY Homeodomain-like 8 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00271 Trre-Chr5 1661548 1663770 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g00271 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00271 - - gmx:100804396 150.984