Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00269 ATGTCCACAGCCGAGCCACCATTTTCCACTACTCTGGTCACCACCGATGTAGGTCTCGGCTACGGCATGGCGATAGCCATAAGCATCCTCGTTCTCATATCCGCCATCATGTTCGCCTCTTACCTCTGCGTCCGTATAAAATCACACGGCCTTCGCGACTCCTTCCGCCTCGAAAGCATTCATCAAAACAATACTAATAATAACTCCGTCCAGCCCAGTCCGTTTATCTTAGGCTTAGAAAAGCCCATGATTGAAGCCTACCCAAAGATGATACTTGGAGAGAGCAGAAGATTACCAAAGCCCAATGAAAGCCCGTGTGCTATTTGCTTGACTGATTATCTTCCAAAGGATACCATACGCTGCGTTCCTGATTGTCAACATTGTTTTCATGCCGACTGTGTTGATGAATGGCTTCGGATGAGTGCCACGTGTCCTTTGTGTCGGAATTCTCCTGCTGTTTCGCCGGTAACTACGCCGGTGGTTACTCCGTTGTCGGAGCTTGCTCCTCTGGCTTTTCATGCCAGGTGA 528 0.4924 MSTAEPPFSTTLVTTDVGLGYGMAIAISILVLISAIMFASYLCVRIKSHGLRDSFRLESIHQNNTNNNSVQPSPFILGLEKPMIEAYPKMILGESRRLPKPNESPCAICLTDYLPKDTIRCVPDCQHCFHADCVDEWLRMSATCPLCRNSPAVSPVTTPVVTPLSELAPLAFHAR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00269 175 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Trre5g00269 175 PANTHER RING-H2 FINGER PROTEIN ATL67 9 173 IPR044289 GO:0016567|GO:0016740
Trre5g00269 175 CDD RING-H2_EL5-like 106 148 - -
Trre5g00269 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 152 IPR013083 -
Trre5g00269 175 SMART ring_2 106 147 IPR001841 -
Trre5g00269 175 SUPERFAMILY RING/U-box 99 153 - -
Trre5g00269 175 Pfam Ring finger domain 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00269 Trre-Chr5 1644243 1644770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00269 1 175 C3H Transcription Factor Family AT5G07040 55.429 1.21e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00269 - - lja:Lj3g3v0787250.1 235.343