Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00265 ATGCTAAGTGGATGGAGTTATGATGTGTTCCTTAGTTTTAGAGGTGAAGATACAAGAACAAGTTTCACCGGCTCTCTCTATCATGGTTTATGCCAAAAGGGTATTAATGTTTTCATAGATGATGAAGAGCTTAGAAGAGGAGAACAAATATCTCCATCTCTTCTTACAGCCATTGAAGAATCTAGAATTTCTATCATTGTGTTTTCTACAAACTATGCATCTTCAAGTTGGTGTCTTGATGAGCTTGCTAAGATTCTTGAGTGTTGGAAAACAAAAGGACAATTAGTCTTTCCAGTTTTCTACTATGTTGACCCTTCTTTTGTAAGGCATCAAAAAGGAAGTTTTGGAACAGCAATGGCTAAACATGAAGTTACTTTCAAGGATGATGTTGAAAGGTTGAAGAAGTGGAAAAAAGCCTTGTTTGATGCAGCCAATTTTTCAGGTTGGAGCTTAGAAAATGGGTATGAATTTGAGCTTATCATAAGGATCATTGAGGAGGTGTCTAGCAAATTAAATCACACCCTTTTGCATATTGCTGAGCATCCAGTTGGACTAGAAACTCGCATATCGGAAGTGAAATCACTTTTGCAAACTGAAAATCTTGGTGAAGAAGTTTCTTTCATTGGAATCTATGGACTTGGAGGTATAGGAAAAACAACAATTGCAAGAGCATTGTACAACTCAATTGCTAATCAATTTGATGCCACAAGTTTCCTTACTGATATAAGAGAAAGTTCAACTCAAAGACAAGGCTTAGTTCAACTTCAAGAAACACTTCTTTATGAAACACTTGGTATAAAGAATATTATGTTAGGAAATGTTTATAAAGGTATCCCTATTATAAAAAAGAGATTATGTGGCAAAAAAGTGCTTTTGATTCTTGATGATGTTGACAAATTGGAACAACTTCAAGCATTAGCAGGAGGACGCGATTGGTTTGGTTTCGGAAGTAAAATAATCATAACAACAAGAGATAAGCAATTATTAGCTAATCATCAAGTTGACAAAACATATGAAGTAAAGAAACTAAATCATGAAGAAGCTTTTGAACTTTTTACATGGAATGCATTCAAAAGGAAAGGAACTAATGAGGGCTATATGGAGATTTCCAACAATGTTGTGCTCTATGCTGAAGGACTTCCATTGGCTTTGAAAGTAATGGGATCAAATTTGTTTGGTAAAACAGTTGAGGAATGGAAATCTGCATTGGCTAAATATGAAAAAATTCCTAATAAAGAGGTTCAGAATGTACTTAGAGTAACTTTTGATAATTTAGAAGAGAATGAGAAGGAAATTTTCTTGGATATAGCATGTTTCTTTAAGGGAGAGACAGTTGAATATGTCGAAAAAACACTTCAAGCTTGTGGTTTCTTTCCGAAATTTGGTATCAGTGTACTTACTGATAGGTCTCTTGTAAGTATCGATGAATATAACAGATTGCGAATGCATGATTTGATACAAGACATGGGGAGGGAAGTTGTTAGAGAAGTTTCTCCGTTAGAGCCTGGAAAACGGAGTAGGATATGGAATCATGAAGATGTTATTGAAGTACTAACTGAAAGTTCGGGGACTAATAGTATTCAAGGCATGATGGTGGATCTTCCTGATCAATATATGGTACACTTGAAAGATGATTCCTTCGGAAAGATGACAAATCTTAAAATTCTTATAGTTAGAAATGGACACTTTTATGGAAGCCCTCAACATCTTCCAAACAATTTAAGGTTGCTTGATTGGGTGGAATATCCTTCATCATCTTTACCATCAACGTTTCATCCAAAGAAACTTGTTGTACTCAACTTGTCGCGCAGTCGTTTTACAATGCAAGAGCCATTCAAGCATTTGGATTCTTTGACTTCTATGGATTTGAGTCATTGTCAGTTCTTAACAAAGCTACCTGACATTTCTAGTGCTCCAAATTTAACAGAACTAAATCTTGACTATTGTACAAATCTAGAACAAGTTCATGACTCAGTTGGATTTCTTGACAAACTTATTGAGTTAAGGGCTTATGGATGCACTAAGCTTAAGGATTTTCCACAAGCTATCAAATTGACATCATTGCAAACTCTAATTCTTAATTGGTGCTCAAGTCTTCAAAAATTCCCAACAATTTTGGAGAGAATGGAAAATCTCACATCTATTTCCATTGAAGGAACTGCTATTGAAGAATTGCCTCCTTCCATTGGAAATCTTGTTGCTCTTCAAGAATTTAGCATGACATCTTGCTTGAGCCTCAAGGAACTCCCAGAAAACATTGACATGTTGCATAATCTTAGAAACCTTGATATTGAAGGTTGTCCACAACTTAGAAGTTTTTTGACAAAATTGAGAGAATTAGGACAATCTACTCTTACCTTTGGTAATGTTCAATCATTGAATCTAGAAAATTGTGGCCTTATAGATGAAGATCTTCCCATAATTTTCAACTGTTTCCCAAATTTATCATCATTAGTCCTTTCAGGAAGTAATTTTGTAACTCTTCCAAGGTGCATTGAAGAATATTATCCCTTGGAATTTCTTCACTTAGATGACTGCAAACAGCTCCAAGAAATTTCATGCCTTCCTCCTAATTTACAGTTCATCAATGCAAGAAATTGCATATCATTGACTGCCGAGTCATCAAACTTATTACTAAGCCAGGACACTTTTGAGGCATATGAGTTACAAGTTATGGTTCCAGGAACAAGGGTTCCAGAATGGTTTGACCACATCACCAAAGGAGAATATATGACATTTTGGGTCAGAAAAAAATTTCCAGCAATTATTTTATGCTTTGCTCTTGCAATAGAGAGTAAAATGAAGAAGAGTTTCAACTGCGAAATCCGATTCTATATAAACAGTGATGAAGTTTATGAATTGGAAATACCAATAATGTATTCAGAACTGGTGACAAATCATCTATGGCTTTCTGATTTGAGGACTCATTCATCCATCAGTTTGAATGATATTGAATCATATCTAGTTGATGATGATTGGAATCAGATTGAGATTTCATGTGAAAAAGTAATTGGACCATCAAATATGACTATAAGCTGGTGTGGAGTTCATGTATGTAAGCAAGAAGCTAACATGGAAGATATTCTATTTGAAGATCCTTATCTTGATTCAGATTTAAGCATAGAAACTGAGAATATTGATTCTGATTTGGATAAAAACAATGAAGAAAGCATAGAGAACTTGGAAGATTATAATATTTCTGTATGTCACAATGACATGGATCATAATCAAGATAAGATTTTATTGCATACCAAAACATTGGATAGTGTTACTGAAGTTTCGATGGATATAGTGTGTTTTGATGGCACCAATGTTGTTAGAGAATCAAACATGGTAGCTTCTGATCATCATGAAAAAGCTCAACAAAAATCTGAAGTCACAAATCTTGATGATGAAGAAATGGAAGCATTTTATGCTATTCTTGATGCTGAGACCTCAGTTCTTTCACATTCCAATGACAACAAAGTGGTTTCTGAATCATCCAAAAGAATAATTCCAAGTGAAGAAACCAAGAAAGCTTTGAAGACACTTGAAGATTTTCTCACCAAAGATTTTTCTGTTCTATTAAGGCCTAATGAGTACAATACCATGGAATCTACCTTAGATTACCTCACACATTTACCTACAGAAGATGGAATATCTGTTGAAATAAGATCAATGGTTAAAGAAGTTTCAAGACAGTTCACTTCTTGGAGTTATGATTACACACATGAGGGCAAGAAAATCGAGGTTACAAAAGCTAAGTTGTTGAAAAGTGATGAACTTAAAGAGGATCTTGAAGCTAACAAAAAACTTTTTAGAGAAGTTAAGTATTTGGAAAATGACTTATGCAATGAGTTGGAATATTTAGAGGAAAGAAAGAAGGAACTAGAAGAACAAATAAATGCTGTTAAGGCTAATATATCTGCTTCACAAGTAGCTAAGAACATGGCTTCTGATACAAAGAGAGAAATCTTTGAGAATGCAAAGATTCTAAAAGTTCAAAGAGATGAGTTAAGGGAACAAGTACATTGTTTGAGAGATGAGCATGATTTGGCTAAGAAAATTCAGGCAAATATTAGAGATGAATGGTCAAAGCTAGGTGAAAAATTTAGCAACATTGCCGACAAAAGTTAG 4116 0.345 MLSGWSYDVFLSFRGEDTRTSFTGSLYHGLCQKGINVFIDDEELRRGEQISPSLLTAIEESRISIIVFSTNYASSSWCLDELAKILECWKTKGQLVFPVFYYVDPSFVRHQKGSFGTAMAKHEVTFKDDVERLKKWKKALFDAANFSGWSLENGYEFELIIRIIEEVSSKLNHTLLHIAEHPVGLETRISEVKSLLQTENLGEEVSFIGIYGLGGIGKTTIARALYNSIANQFDATSFLTDIRESSTQRQGLVQLQETLLYETLGIKNIMLGNVYKGIPIIKKRLCGKKVLLILDDVDKLEQLQALAGGRDWFGFGSKIIITTRDKQLLANHQVDKTYEVKKLNHEEAFELFTWNAFKRKGTNEGYMEISNNVVLYAEGLPLALKVMGSNLFGKTVEEWKSALAKYEKIPNKEVQNVLRVTFDNLEENEKEIFLDIACFFKGETVEYVEKTLQACGFFPKFGISVLTDRSLVSIDEYNRLRMHDLIQDMGREVVREVSPLEPGKRSRIWNHEDVIEVLTESSGTNSIQGMMVDLPDQYMVHLKDDSFGKMTNLKILIVRNGHFYGSPQHLPNNLRLLDWVEYPSSSLPSTFHPKKLVVLNLSRSRFTMQEPFKHLDSLTSMDLSHCQFLTKLPDISSAPNLTELNLDYCTNLEQVHDSVGFLDKLIELRAYGCTKLKDFPQAIKLTSLQTLILNWCSSLQKFPTILERMENLTSISIEGTAIEELPPSIGNLVALQEFSMTSCLSLKELPENIDMLHNLRNLDIEGCPQLRSFLTKLRELGQSTLTFGNVQSLNLENCGLIDEDLPIIFNCFPNLSSLVLSGSNFVTLPRCIEEYYPLEFLHLDDCKQLQEISCLPPNLQFINARNCISLTAESSNLLLSQDTFEAYELQVMVPGTRVPEWFDHITKGEYMTFWVRKKFPAIILCFALAIESKMKKSFNCEIRFYINSDEVYELEIPIMYSELVTNHLWLSDLRTHSSISLNDIESYLVDDDWNQIEISCEKVIGPSNMTISWCGVHVCKQEANMEDILFEDPYLDSDLSIETENIDSDLDKNNEESIENLEDYNISVCHNDMDHNQDKILLHTKTLDSVTEVSMDIVCFDGTNVVRESNMVASDHHEKAQQKSEVTNLDDEEMEAFYAILDAETSVLSHSNDNKVVSESSKRIIPSEETKKALKTLEDFLTKDFSVLLRPNEYNTMESTLDYLTHLPTEDGISVEIRSMVKEVSRQFTSWSYDYTHEGKKIEVTKAKLLKSDELKEDLEANKKLFREVKYLENDLCNELEYLEERKKELEEQINAVKANISASQVAKNMASDTKREIFENAKILKVQRDELREQVHCLRDEHDLAKKIQANIRDEWSKLGEKFSNIADKS 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00265 1371 Pfam NB-ARC domain 188 412 IPR002182 GO:0043531
Trre5g00265 1371 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 173 - -
Trre5g00265 1371 Coils Coil 1315 1349 - -
Trre5g00265 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 436 IPR027417 -
Trre5g00265 1371 Gene3D - 3 169 IPR035897 -
Trre5g00265 1371 SUPERFAMILY L domain-like 529 876 - -
Trre5g00265 1371 ProSiteProfiles TIR domain profile. 5 171 IPR000157 GO:0007165
Trre5g00265 1371 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Trre5g00265 1371 Gene3D - 170 338 IPR027417 -
Trre5g00265 1371 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 149 IPR035897 -
Trre5g00265 1371 Gene3D - 342 426 IPR042197 -
Trre5g00265 1371 SMART till_3 6 146 IPR000157 GO:0007165
Trre5g00265 1371 Coils Coil 1273 1307 - -
Trre5g00265 1371 Gene3D Ribonuclease Inhibitor 519 701 IPR032675 -
Trre5g00265 1371 PRINTS Disease resistance protein signature 613 629 - -
Trre5g00265 1371 PRINTS Disease resistance protein signature 377 391 - -
Trre5g00265 1371 PRINTS Disease resistance protein signature 284 298 - -
Trre5g00265 1371 PRINTS Disease resistance protein signature 207 222 - -
Trre5g00265 1371 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 704 IPR044974 GO:0006952
Trre5g00265 1371 Gene3D Ribonuclease Inhibitor 702 881 IPR032675 -
Trre5g00265 1371 Pfam TIR domain 7 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00265 Trre-Chr5 1606943 1612583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00265 7 780 WRKY Transcription Factor Family AT4G12020 31.801 9.55e-98 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00265 - - ccaj:109810288 2054.64