Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00258 ATGGGCACTGAAAAAATTAGATCTTGTGCAAACTTCCTAGAGAACTCTATGCCATACTTTGCCATGATCCTTTTACAATTTGGCTATGCTGGCATGAACGTTATAGCCAAGCTTTCTCTCAATGGAGGCATGAGTCACTATGTCCTTGTTGTTTATCGTCACGCTTTTGCAACTATTGCTATAGCTCCATTTGCCATTATCTTTGAAAGGAAGGCTCAACCAAAGATTACATTTCCCATTTTCTTACAAATTTTCCTCCTAGCTCTTCTTGGGCCCGTGATAGATCAAAACTTATACTATGCTGGGTTGAAATTAACATCCCCAACCTTCTCATGTGCAATCAGCAATATGCTTCCAGCAATGACATTTATGATTGCGGTTTTATGCCGGATGGAAAAGATCAACATGAAGAAGTTGAGATGCCAAGCAAAGGTGGTTGGAACAATGTTAACTGTGGCTGGAGCAATGTTGATGACCTTGTATAAAGGTCCTATTGTGGAGTTGTTTTGGACTAAAGATACACTTCATACTAAAAACAATACAACAAACTACACAACATCTTCAAGCAAGGATACTTGGCTCTTAGGTTCCACTTTACTAATTATTTCAACTTTGGCATGGGCATCCCTCTTTGTGTTACAAGCAAAAGCTATAGAAACATACAAGAATCATCAGCTAACACTCACATCACTCATATGTTTCTTTGGTACGCTTCTAGCTTTTGCTACCACATTGGTTATGGAACGCAAACCTTGTGTTTGGACAATTGGTTGGGATATGAATTTATTAGCTTCTGCCTATGGGGGGATTGTTGCATCAAGTATATCATACTACGTACAAGGATTGGTAATAAAAAAGAAAGGTCCTGTTTTTGCAACTTCATTTAGCCCTTTGATGATGATCATTGTAGCAATCATGGGATCCTTCTTCCTTGCAGAGCATATTTTTCTTGGAAGTGCAATTGGTTCCATCTTGGTTGTGACAGGCTTATATTCTGTTTTGTGGGGAAAGCACAAAGAACAAGTGGAAATTAAAGTGGCGCCAGATGATCATAAACCGTTTCCTATAAAGAGTGCTCGGTTAAATGGAAATATAGGGAAACTTTCTGAATCCATTGATCAACTAAGTGAAGCAAAATCATTTCAGAAAGTAGAACCAAACATTTCAGTAGTTATTATTAATTGCAACATAAGTTAA 1197 0.3793 MGTEKIRSCANFLENSMPYFAMILLQFGYAGMNVIAKLSLNGGMSHYVLVVYRHAFATIAIAPFAIIFERKAQPKITFPIFLQIFLLALLGPVIDQNLYYAGLKLTSPTFSCAISNMLPAMTFMIAVLCRMEKINMKKLRCQAKVVGTMLTVAGAMLMTLYKGPIVELFWTKDTLHTKNNTTNYTTSSSKDTWLLGSTLLIISTLAWASLFVLQAKAIETYKNHQLTLTSLICFFGTLLAFATTLVMERKPCVWTIGWDMNLLASAYGGIVASSISYYVQGLVIKKKGPVFATSFSPLMMIIVAIMGSFFLAEHIFLGSAIGSILVVTGLYSVLWGKHKEQVEIKVAPDDHKPFPIKSARLNGNIGKLSESIDQLSEAKSFQKVEPNISVVIINCNIS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00258 398 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
Trre5g00258 398 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020
Trre5g00258 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Trre5g00258 398 PANTHER WAT1-RELATED PROTEIN 17 347 IPR030184 GO:0016020|GO:0022857
Trre5g00258 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00258 Trre-Chr5 1569470 1574908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00258 1 375 Nodulin-like Gene Family AT5G07050 66.667 7.69e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00258 - - gmx:100799947 560.451