Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00257 ATGGGCGCTGAAAAAATTAGATCTTGTGCAAACTTTCTTGAGAATTCTAAGCCATACTTTGCCATGATCATTTTACAGTTTGGTTATGCAGGCATGAACATTATAACCAAGCTTTCTCTCAATGGAGGTATGAGTCATTATGTCCTAGTTGTTTATCGCCACATTTTTGCAACTATTGCTATAGCACCATTCGCCATAATCTTTGAAAGGAAGGATCAACCAAAGATTACATTTCCAATTTTCATGCAAATTTTCCTCCTAGCTTTGCTTGGGCCAGTGATAGATCAAAACTTCTACTATGCTGGGTTGAAATTAACATCCCCAACCTTCTCATGTGCAATGAGCAATATGCTTCCAGCCATGACATTTCTCATTGCAGTTTTATGCCGGATGGAAACTATCAACATGAAGAAGTTGAGATGCCAAGCAAAGGTGGTTGGAACAATGTTAACTGTAGCTGGAGCAATGTTGATGACCTTGTATAAAGGTCCTATTGTGGAGTTGTTTTGGACCAAAGATACACTTCATAGTGATAAAAACAATACAACAAATATCACAACATCCTCAAGCAATGATAATTGGTTCATAGGTTCCATTTTACTAATTATTTCAACTTTGGCATGGGCATCCTTGTTTGTTTTACAAGCTAAAGCTATAGAAACATACAAGAATCATCAGCTAACACTCACATCACTTGTATGTTTCTTTGGCACGCTTCTAGCTTTTGCTACAGCTTTGGTTATGGAACACAAAGATTCTGTTTGGACAATTGGTTGGGATATGAATTTATTAGCTTCTGCTTATGCGGGGATTGTTACATCAAGTACAGCATACTATGTACAAGGGTTAGTAATGAAAAAGAAAGGGCCTGTTTTTACTACTTCATTTAGCCCTTTGATGATGATTATTGTAGCATTCATGGGCTCCTTTATCCTTGCAGAGCAGATTTTTCTTGGAAGTGTGATTGGTTCCATCTTGGTTATCATTGGTTTATATTCTGTTTTGTGGGGTAAGCACAAAGAACAAGTGTTGGAAAATAAAGTGGCACCAGATGATAAACCCTTGCCTATAAAGGGTGCTATGGTAAATGGTGACAAAGGGACAATTTCTGCATCCATTGATCAACTAATTAGTGAAGCAAAATTAAATCAAAAAGTTGAACCAAACATTTCAGTAGTTATTATTAATTGCAACATAAGTTGA 1203 0.3666 MGAEKIRSCANFLENSKPYFAMIILQFGYAGMNIITKLSLNGGMSHYVLVVYRHIFATIAIAPFAIIFERKDQPKITFPIFMQIFLLALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFLIAVLCRMETINMKKLRCQAKVVGTMLTVAGAMLMTLYKGPIVELFWTKDTLHSDKNNTTNITTSSSNDNWFIGSILLIISTLAWASLFVLQAKAIETYKNHQLTLTSLVCFFGTLLAFATALVMEHKDSVWTIGWDMNLLASAYAGIVTSSTAYYVQGLVMKKKGPVFTTSFSPLMMIIVAFMGSFILAEQIFLGSVIGSILVIIGLYSVLWGKHKEQVLENKVAPDDKPLPIKGAMVNGDKGTISASIDQLISEAKLNQKVEPNISVVIINCNIS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00257 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 340 - -
Trre5g00257 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Trre5g00257 400 PANTHER WAT1-RELATED PROTEIN 18 346 IPR030184 GO:0016020|GO:0022857
Trre5g00257 400 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
Trre5g00257 400 Pfam EamA-like transporter family 196 335 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00257 Trre-Chr5 1563357 1567239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00257 1 378 Nodulin-like Gene Family AT5G07050 66.754 1.18e-179 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00257 - - gmx:100799947 575.089