Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00254 ATGGTACAAACTGCAGTTTTGTTTCTTTTACAGCAATTCTACAAACTTGCTGTAGAAGAAACCTACAAATTTGCAGTAGCAGAAGTAACTTTCCTGAAAGATGTACATAAAGGCTTTGATGATATCAAACATGAACTTGAGAGCATCCAAGCATTCCTCAAGGATGCAGACACAAAGGCTGCTACTGAAGAAGGAGTCAAAATGTGGGTGAAGGACCTAAGAGAAGCATTTTTTCGCATAGAAGATGTGATTGATGAGTATGTCGAGTATTTGGCAAAAAATGTCAAGAATGCTTCTGCTATTCAAAAGTTCAAACCTGGGAAAAGACATCAAATTGCTTCTTCTATTCAAGCCATCAAGTCATCACTTGTTGAAATCAATGAAAGAAGAAAGAGGTATGACTTTAAGAAGGAAGATGGATCAGGAAGCTCTAGAGGGGCTACTCAAAATGAAAATTTTGGTGACCCTCGAATGGATTCTCTTTTCATTGAAGAGACTCAAGTTGTTGGGTTTGAAAAACCAAAAGACGACTTGTTGCATTTTTTGGTAGAGGAAACCAATGAGCTCAGGTTGGTTTCTGTGGTAGGCATGGGAGGACTCGGAAAAACTACTCTTGCAAAGATTGTTTTTGATAATCAGTCGGTGAAAAGACACTTCAATTGTCACGCTTTCATAACAGTTTCTCAAACCTACAATGTGAGGGAGTTGTTGACAAAGATGATACAGGAGTTTTGCAAGGACACCAATGAGCCTATTCCAGAGGGTCTGCGAGAGAAGGGTGACACAACAACATTTATTAATCAAGTGAGACAATACCTTGACTTGAAAAGGTACTTGGTTTTATTTGATGATGTTTGGACAGAAAAATTTTCTGATGAGATTAAGCACGCCTTAGTTAGTACTAATAAAAAGGGAAGTAGAATCATTGTGACCACTAGAAATATGAATGTAGCTGAATCTTTTAAGAAATCTTTTACTGTTGATGTTCACAAGCTACAACCTTTGCCTGAAGAAAAAGCATATGAATTGTTTTGCAAGAAGGTGTTTAGAGGGAGATGTCCTACAGAACTTGAGAAGATGTCCAAGGAAATTGTTAAAAAATGTAGAGGGCTACCACTGGCAATTGTGGCCATTGGAGGTCTTCTATCAACAAAAGAAAAAACCCCAATTGAGTGGAGAAAGGTGAGTCAAAATCTTAGAATGGAGTTAAAGCGCAATATTCATTTAACTAGTTTAGACATGATTTTATCTCTTAGTTATGACGATTTGCCTCACCATTTGAAACCATGCATGCTATATTTTGGTATATATCCTGAGGACTACACCATCAATAGGAAGAGACTTACTAGGCAATGGATAGCTGAAGGGTTTGTTGAGAATGAGGAGACAAAACCGTTGGAGGAAGTTGCTGAAGAGTACCTGAGAGAGTTGATACAAAGAAGTTTGGTTAATGTCTCCACAATTGGCTTTGATGGGAAAGTCAAAAGTTGTCATGTCCATGATGTGTTGCGTGAAGTGATCATTACAAAAATGAAAGATTTAAGTTTTTGCCATTTAATTCATAAAGATGATGATGAACAAGTAACAGTTGGAATAACTAGACGCTTTTCTATAGCAGCTGTCTCCAACAATGACTTGAGAAACAATAGAAACTCAGGAATTCGTGCTATTTTGGTTTTCAACAAAGGTGAATTATCTAAAGATTTCATGAATGGATTGTCTGCCAAGTTCAAGCTTTTAAAAGTACTAGATTTTCAGAATTCTTTGTTGAGTTCTATTCCGGATAACTTGGGGGATCTTTTTCACCTAAGGTACTTGAACCTGAGTCATACAAAAGTTACAATTCTTCCGAGATCCATCGGTATGCTAGTCAACTTAGAAACCTTGGATCTAAGGCAAACTAAAGTGCGCGAGTTACCAAAAGAGATAAACAAGCTCACAAAGCTAAGGCTTCTTCCAGTTTATTATAGAAAATATGAAGGGCAGTATTCTATGTTGAACTTTACAGATGGATTGAAAATGAAAAAAGGTATTGGATGCTTGAAATCTTTACAAAAGCTTTACTTTTTGGAAGCAGCTGATCATGGTGGAGTAGACCTTATCCAAGAGCTCGAAAAGTTGACACAGTTAAGGAAGTTAGGCATAAAGTGTGTGCGGCAAGAACATGCAAATGCTCTATGTGCTGCAATACAAAAAATGAACGACCTTGAATCTCTTAATATTAGTGCTAAAGATAGAAACGAAACCCTTGACATGGATTTTTCGTCAACTCCTTCACCTAATCTTCCTAATCTTAGAGTTCTAAACTTGAAAGGTAAATTGACAAATTTGCCTAATTGGATTCCAAATCTCAACTCTCTTGTGAAGCTAAGACTCGGCTTATCTAACTTTCAACATGATCCACTGGACTCTTTGAAGAGTTTGCCAAATTTGTTGAGGTTGAATTTGTGGGATGATGCATTTGCTGGTGAGAGTTTGCATTTCAAGGTTGGAGGGTTTCTAAAGCTAAAGGAAATTGATCTCACTAGATTGAATAAACTCAGTTCTGTATCTACAGACAAAGAAGCTTTACTTGGTCTTGAACACTTCAGATTTAATAAAAACCCTCAATTGACGGTGTTACCCCAAGACCTCCAAAACTTGAAAAACCTTCAATTCCTTGGATTTGCTGACATGCCAGCTGAATTAGTTAATAGCATAAAGGAAGGTGGATCGTGCCATGCGATTATCGATCATATCCCCCTTGTAAAAATTTGTCAGAATAAAGGACCAGAATTTAATCAGTATGATTTAGAGATCATTCCTATTATATACTATTGTATTATATTTTTTATTTAG 2838 0.3679 MVQTAVLFLLQQFYKLAVEETYKFAVAEVTFLKDVHKGFDDIKHELESIQAFLKDADTKAATEEGVKMWVKDLREAFFRIEDVIDEYVEYLAKNVKNASAIQKFKPGKRHQIASSIQAIKSSLVEINERRKRYDFKKEDGSGSSRGATQNENFGDPRMDSLFIEETQVVGFEKPKDDLLHFLVEETNELRLVSVVGMGGLGKTTLAKIVFDNQSVKRHFNCHAFITVSQTYNVRELLTKMIQEFCKDTNEPIPEGLREKGDTTTFINQVRQYLDLKRYLVLFDDVWTEKFSDEIKHALVSTNKKGSRIIVTTRNMNVAESFKKSFTVDVHKLQPLPEEKAYELFCKKVFRGRCPTELEKMSKEIVKKCRGLPLAIVAIGGLLSTKEKTPIEWRKVSQNLRMELKRNIHLTSLDMILSLSYDDLPHHLKPCMLYFGIYPEDYTINRKRLTRQWIAEGFVENEETKPLEEVAEEYLRELIQRSLVNVSTIGFDGKVKSCHVHDVLREVIITKMKDLSFCHLIHKDDDEQVTVGITRRFSIAAVSNNDLRNNRNSGIRAILVFNKGELSKDFMNGLSAKFKLLKVLDFQNSLLSSIPDNLGDLFHLRYLNLSHTKVTILPRSIGMLVNLETLDLRQTKVRELPKEINKLTKLRLLPVYYRKYEGQYSMLNFTDGLKMKKGIGCLKSLQKLYFLEAADHGGVDLIQELEKLTQLRKLGIKCVRQEHANALCAAIQKMNDLESLNISAKDRNETLDMDFSSTPSPNLPNLRVLNLKGKLTNLPNWIPNLNSLVKLRLGLSNFQHDPLDSLKSLPNLLRLNLWDDAFAGESLHFKVGGFLKLKEIDLTRLNKLSSVSTDKEALLGLEHFRFNKNPQLTVLPQDLQNLKNLQFLGFADMPAELVNSIKEGGSCHAIIDHIPLVKICQNKGPEFNQYDLEIIPIIYYCIIFFI 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00254 945 Gene3D Ribonuclease Inhibitor 556 906 IPR032675 -
Trre5g00254 945 Pfam Rx N-terminal domain 8 93 IPR041118 -
Trre5g00254 945 CDD RX-CC_like 5 128 IPR038005 -
Trre5g00254 945 PRINTS Disease resistance protein signature 621 637 - -
Trre5g00254 945 PRINTS Disease resistance protein signature 272 286 - -
Trre5g00254 945 PRINTS Disease resistance protein signature 368 382 - -
Trre5g00254 945 PRINTS Disease resistance protein signature 191 206 - -
Trre5g00254 945 SUPERFAMILY L domain-like 511 894 - -
Trre5g00254 945 FunFam Probable disease resistance protein At1g63360 420 509 - -
Trre5g00254 945 Gene3D - 420 510 IPR036388 -
Trre5g00254 945 PANTHER DISEASE RESISTANCE PROTEIN RP 41 847 IPR044974 GO:0006952
Trre5g00254 945 Pfam NB-ARC domain 172 422 IPR002182 GO:0043531
Trre5g00254 945 FunFam Probable disease resistance protein At5g66910 334 419 - -
Trre5g00254 945 MobiDBLite consensus disorder prediction 135 154 - -
Trre5g00254 945 Gene3D - 159 329 IPR027417 -
Trre5g00254 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 434 IPR027417 -
Trre5g00254 945 FunFam Probable disease resistance protein At1g61300 155 324 - -
Trre5g00254 945 Gene3D - 5 131 - -
Trre5g00254 945 Gene3D - 335 419 IPR042197 -
Trre5g00254 945 SMART LRR_typ_2 577 599 IPR003591 -
Trre5g00254 945 SMART LRR_typ_2 600 622 IPR003591 -
Trre5g00254 945 SMART LRR_typ_2 623 646 IPR003591 -
Trre5g00254 945 SMART LRR_typ_2 762 784 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00254 Trre-Chr5 1538048 1540885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00254 188 389 WRKY Transcription Factor Family AT5G45050 31.401 1.13e-12 70.5