Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00253 ATGGCAGAAGCAGCAGTGTCGTCTGTTTTGCAAAAACTCGGTCAACTTATAGTCCAAGAAGCAATTTCGCTGAGAGGAATTGGGAGAGACTTCAAAGAGATCAAAGATGAACTTGAGAGCATCCAAGCCTTCCTTAAGGATGCAGATAGAATGACAGCAGATGATGAAGGAGGACAAGTCAATGAAAGAGTCAAAATATGGGTGAAGCAGCTGAGAGAAGCATCTTTTCGCATAGAAGATGTCATTGATGAGTATAACATGTATGAGGCAAGTCAAATTGGTTGTGAGATTCACAGCCTTTCTGGACTCATAGCCTTACTCCAAAACATTTCTCACAAGATACCAACCCTGAAGTATTATCAACTTGCTTCTGAGATTCATAACATCCTACTATCAGTTGCCAAAATCAGTGAAAGAAGTTTGAAGTATGGATTTAAGCCTGGAAGTGGATCAAGCAGCTCAAGAGAGATCACAGCAGGGAGATATAGTAACTCTGAAATGGATTCTTATTTCAATCAAGAAGTTGTGGGGTTTGAGTCCCAAAGAGATGAATTGGTTGGATGGTTGGTTGGGGGAACCAGTGAGCGCACATTGATTTCTGTGGTAGGCATGGGTGGACTAGGAAAAACTACTCTTGCTAAGCATGTTTTTGATAACCAACTTGTGAAAAATCACTTTGATTGTCGCTTTTACATCTCAGCTTCTCAATCCAACAACACTAAACAGGAGCTGTTGATTGGTATGATAAAGAAGTTTTGCGAAGATAGCAATGAGCCTGTTCCACTGAATCTGAAGGATATGGATGATATTGCATTGGTTGAGCATGTGAGACAATACCTTGAGCCAAAGCGGTACTTGGTGTGGTTTGATGATGTTCGGAAAGCAGAATTTTCTGATGGGATTGCACATGCCATGGCTTATAATAACAGAGGAAGTAGAATCGTTGTGACCACAAGAAATAAGGACGCCGCAGAAAAATTGAAGGTATGTTTTTCTGTTCACATTCACGAGCTAAAGCATTTGCCCAAAGAGAAAGCATTGGAACTATTTTGCAAGAAGGCATTTAGTTTTAGTGGGCAGTGTCCACCAGATCTTGAAAAAATGTCTGAAGAAATTGTTGAAAAGTGTGGAGGGCTACCACTAGCAATTGTGATCGTTGGTGGTATTTTGTCAACAAAACCTAAAACCTTTTCGGTGTGGGAAGCGGTGAGTAAAGATCTGGGCATGGGGTTAGATGGCAATGTGCGTATCAATCAGCTAACAACAATTTTATCTCGGAGTTATGATGATCTTCCATGGCATTTGAAATCATGCATGTTGTATTTTGGCATCTATCCGGAGAACTACACCATCAATTGTAAGAGACTTACTGGGCAATGGATAGCTGAAGGATTTGTTATGCCTGACGGGAATAAAACTTTGGAGGAAGTTGCTGAAGAGTACTTGAAAGAGCTGATACAAACAAGTTTGGTTCAAGTTTCTAGTGTTGGCATTGATGGGAAAGTTAAAAGCTGTAAAGTCCATAATTTGTTGCGTGATATAATCATTATGAAAATGAGAGATCTAAGTTTTTGCCATATAATGTATGACGATCATGACCAAGACACAGTTAAAATTACCAGACGCTTTTCTATAGCAACTTTCTCCAACAATGTGCTGACGAGCAATAGTAACTCAGGAATTCGTGCTATCATTGTTTTTAACAAAGCAGAATTTCCTGAATATTTCATCAGCAATTTATCTATCAAGTTCAAGCTTATAAAAGTAGTTGACTTTGAGCATTCTTTGTTGAATTATGTTCCCGAGAACATAGGGAGTCTTTTCCATCTAAAGTATTTGAACCTAAGTCATACAAAAGTTAAGGTTCTTCCTAGATCTATTGGCAACCTAGTGAACTTAGAAACGTTGGATCTAAGGCAAACTGAAGTTCACGAGTTACCAATGGAGATAAACAAGCTCACAATGCTAAGGCTTCTTCCAGTTTATTATAAAAGAAATGGAGGGAATTATTCTGCTTTCGATACCAAAGGGGTGAAAATGCAACAGGGTATTAAAGGCTTGAAATCTTTGCAAAAGCTTTATTTTTTGGAAGCAGATCATGGTGGAATAGCCCTTATACAAGAGCTCAAAACGTTGAAAAATTTAAAGAAGTTAGGCATAAGATGTGTGAAGAAAGAACATGGAAAGGAATTATGTGCTGCAATACAAGAGATGAAATTCCTTGAATCTCTAAATATTACTGCTAAAGATGCGAACGAAAACCTTGAATTGGATTTTGTATCAGATCCACCACTTAATTTTAGAGTGGTCAATTTGAAAGCTAAACTAAGAAGATTTCCTGATTGGATTCCAAAACTTGGATATCTTGTGAAGCTAATGCTTGCCTTTTGTAAATTTGACGATGATCCACTGGACTCTTTGAAAAATTTGCAAAATTTGTCGTGGCTTATTTTGTGGGATGATGCAATTGCTGGTGATAGTTTGCATTTTCAAGTTGGAGGGTTTCATGAGCTGAAGGAGTTGGATCTCACCAGATTAAATAAACTAAGTTCTGTATCTATAGGCACAGGAGCTTTACCTGCTCTTGAATACTTTAGTTGTCACGGAAATCCTGAATTGAAGGTGTTACCCAGTGACCTTCAATACTTGGAAAACCTTAAATACCTTGGATTTGCTGATATGCCAAAGGAATTAGTTGATAGCATTGATCCGAATGAAGGTGGAACATGCCATAGTATTATCAACCATATTCCCCGTGTACAAGTTCGTGAGAAAGTAGAATCAAGATTTCATGAATATGACTGGCGCCGCATTCCTACTCTACTCCATGTCTGA 2835 0.3848 MAEAAVSSVLQKLGQLIVQEAISLRGIGRDFKEIKDELESIQAFLKDADRMTADDEGGQVNERVKIWVKQLREASFRIEDVIDEYNMYEASQIGCEIHSLSGLIALLQNISHKIPTLKYYQLASEIHNILLSVAKISERSLKYGFKPGSGSSSSREITAGRYSNSEMDSYFNQEVVGFESQRDELVGWLVGGTSERTLISVVGMGGLGKTTLAKHVFDNQLVKNHFDCRFYISASQSNNTKQELLIGMIKKFCEDSNEPVPLNLKDMDDIALVEHVRQYLEPKRYLVWFDDVRKAEFSDGIAHAMAYNNRGSRIVVTTRNKDAAEKLKVCFSVHIHELKHLPKEKALELFCKKAFSFSGQCPPDLEKMSEEIVEKCGGLPLAIVIVGGILSTKPKTFSVWEAVSKDLGMGLDGNVRINQLTTILSRSYDDLPWHLKSCMLYFGIYPENYTINCKRLTGQWIAEGFVMPDGNKTLEEVAEEYLKELIQTSLVQVSSVGIDGKVKSCKVHNLLRDIIIMKMRDLSFCHIMYDDHDQDTVKITRRFSIATFSNNVLTSNSNSGIRAIIVFNKAEFPEYFISNLSIKFKLIKVVDFEHSLLNYVPENIGSLFHLKYLNLSHTKVKVLPRSIGNLVNLETLDLRQTEVHELPMEINKLTMLRLLPVYYKRNGGNYSAFDTKGVKMQQGIKGLKSLQKLYFLEADHGGIALIQELKTLKNLKKLGIRCVKKEHGKELCAAIQEMKFLESLNITAKDANENLELDFVSDPPLNFRVVNLKAKLRRFPDWIPKLGYLVKLMLAFCKFDDDPLDSLKNLQNLSWLILWDDAIAGDSLHFQVGGFHELKELDLTRLNKLSSVSIGTGALPALEYFSCHGNPELKVLPSDLQYLENLKYLGFADMPKELVDSIDPNEGGTCHSIINHIPRVQVREKVESRFHEYDWRRIPTLLHV 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00253 944 CDD RX-CC_like 2 138 IPR038005 -
Trre5g00253 944 Gene3D - 162 332 IPR027417 -
Trre5g00253 944 PRINTS Disease resistance protein signature 628 644 - -
Trre5g00253 944 PRINTS Disease resistance protein signature 279 293 - -
Trre5g00253 944 PRINTS Disease resistance protein signature 198 213 - -
Trre5g00253 944 PRINTS Disease resistance protein signature 376 390 - -
Trre5g00253 944 FunFam Probable disease resistance protein At1g63360 428 517 - -
Trre5g00253 944 Gene3D - 428 518 IPR036388 -
Trre5g00253 944 Gene3D - 4 122 - -
Trre5g00253 944 Gene3D - 340 427 IPR042197 -
Trre5g00253 944 SUPERFAMILY L domain-like 507 898 - -
Trre5g00253 944 PANTHER DISEASE RESISTANCE PROTEIN RP 32 859 IPR044974 GO:0006952
Trre5g00253 944 Pfam Rx N-terminal domain 5 91 IPR041118 -
Trre5g00253 944 Gene3D Ribonuclease Inhibitor 565 913 IPR032675 -
Trre5g00253 944 Pfam NB-ARC domain 181 430 IPR002182 GO:0043531
Trre5g00253 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00253 Trre-Chr5 1528212 1531046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00253 199 395 WRKY Transcription Factor Family AT5G45050 25.888 1.49e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00253 K13457 - vun:114181831 1037.33