Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00245 ATGAAGAAGAAGCTCGACACCCGTTTTCCTGCTGCTCGGATTAAGAAGATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTAGCAGTTCCTGTTTTAGTTTCAAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTACAGAGAGGAGCAAAGACCATAAATGCATTGCATTTGAAACATTGTGTACAAAGCTACAATGTCTTTGACTTTTTGAGAGACATCGTCAACAGGGTGCCTGACTATAGCCACGGCCACGCCCACGCTCATTCTGAGCCTGGAGCTGATGATCGCGCCCTTCCAAAGAGAAGGAAAGCTGGCGGTGATGATGGTAATGACAGTGATGACGAGGCTAAGCGGAGTAAGATGCTTGAGTCAGGCCACACTGGCAGTACTGGTAGGGGAAGAGGAAGAGGCAGAGGAAGAGGCCGTGGTCGAGGGGCTCGAGCCGCTGAAAGAGAAGCCTTACATCAGCAGGTTGAACCCGAACCTTGCACCTCGATGCAACAATGTAGCAAAGAAGTCTCTAATACAAGTATGGCAATAGATAATAGTCCAGAATCAAAGGAAAATAATACAGTTCATGAGGAAAGCACTCAATCTCTCCGAAACATTGATCTGAATGCAAGTATACATGAAAACGAGGACAAAAACAATACAAGCATGGCTACTACTCAGGCCTCATTGCCTGAACCTGCTGCAGCGACAGATATGCAACATGAAGAAATTCCCGGTTGGTCCCTTCCCGATGTGGACAAGATGGCGATCGACACATTGCAGCTTGCCGCAAACCTTGGTAATAGGATAGAAGAGGAGGAAGATTATGATGAGGAAGGGTAA 864 0.4606 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTINALHLKHCVQSYNVFDFLRDIVNRVPDYSHGHAHAHSEPGADDRALPKRRKAGGDDGNDSDDEAKRSKMLESGHTGSTGRGRGRGRGRGRGRGARAAEREALHQQVEPEPCTSMQQCSKEVSNTSMAIDNSPESKENNTVHEESTQSLRNIDLNASIHENEDKNNTSMATTQASLPEPAAATDMQHEEIPGWSLPDVDKMAIDTLQLAANLGNRIEEEEDYDEEG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00245 287 MobiDBLite consensus disorder prediction 92 132 - -
Trre5g00245 287 MobiDBLite consensus disorder prediction 92 211 - -
Trre5g00245 287 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre5g00245 287 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 120 - -
Trre5g00245 287 MobiDBLite consensus disorder prediction 170 196 - -
Trre5g00245 287 MobiDBLite consensus disorder prediction 153 167 - -
Trre5g00245 287 SUPERFAMILY Histone-fold 3 96 IPR009072 GO:0046982
Trre5g00245 287 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre5g00245 287 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00245 Trre-Chr5 1484021 1487383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00245 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.034 6.66e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre5g00245 CBFD_NFYB_HMF 1.5e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00245 K21752 - gmx:100810093 391.734