Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00244 ATGGCTTCAGAATCCTCTAGCATCTCTGCCACTTCACAAGGTCAAAGTGAGTCTTCCAACTCTAAAAAAGTGGTAGTCACGAAGGAGATCGAACAAGATCATTCATCAAACTCAAATTCAAAAAACCCTATTGATTTCGTGAAGCTATTGAAAGATGATTCAGTTCCTATGTTGAATGTGCAAGAGCACAATTTCTTTAGTCATATTCAAGTCGGTTCATCATCTCGTTTTCCTATTAACAACAATGAAACGAAATATGAGAACGAGAATGAAGAGAAAAATTCAAATTCAAAATCTTTTTCGTGCTCTTTTTGCAAGAGACAATTTTCTACTTCACAAGCGTTAGGAGGACACCATAACGCTCATAAGGCGGAACGTGCCTTAGAAAAACAACGTAAACAAAGGTATGATGGTGGTGCTTTAGGTTTAGGGCAACCTCTCTTTAGCCCATATTATAGTTATCCAAGTACTCTTTTTACACCCCCTTATTATAGGGCACTTGGGACTAGAATGGAATCCATGATTCAAAAACCACATCCTAGGTTTACCCCACATAGTATTGGGTATAGTCATGGTGCTTTGTGTTTGCAAGAGATATTAAACCCTTCTCTTGTGTCACTGAGAAATATGGGGGGTGGTAATAGCGGGATTGGAAATCTAAGCATTGGTGGTGCAACTACTTTAAAGATTGAAGATAGTTCAAAAAATAAATTAAAGATTGAAGATGGTTCAAAAAATAAAATTAGTGATATTCTAAAATTTGGAGAGTCTTCTACAAATATTGCTACAAGTTCAAACTCAAACATAGAGAAGAAAAATATTGTGGCTCTTACTTCTAATAAGGATAATATTCATCAATCAAAGTCCAACATTGAAGAAGAAACCTCCAATAATTCTGATGAATCATCTGGACTTGATTTGTCACTTAAGCTTTAA 936 0.3558 MASESSSISATSQGQSESSNSKKVVVTKEIEQDHSSNSNSKNPIDFVKLLKDDSVPMLNVQEHNFFSHIQVGSSSRFPINNNETKYENENEEKNSNSKSFSCSFCKRQFSTSQALGGHHNAHKAERALEKQRKQRYDGGALGLGQPLFSPYYSYPSTLFTPPYYRALGTRMESMIQKPHPRFTPHSIGYSHGALCLQEILNPSLVSLRNMGGGNSGIGNLSIGGATTLKIEDSSKNKLKIEDGSKNKISDILKFGESSTNIATSSNSNIEKKNIVALTSNKDNIHQSKSNIEEETSNNSDESSGLDLSLKL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00244 311 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Trre5g00244 311 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 311 IPR044246 GO:0009788
Trre5g00244 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Trre5g00244 311 MobiDBLite consensus disorder prediction 1 43 - -
Trre5g00244 311 Gene3D Classic Zinc Finger 79 139 - -
Trre5g00244 311 SUPERFAMILY beta-beta-alpha zinc fingers 96 128 IPR036236 -
Trre5g00244 311 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g00244 311 MobiDBLite consensus disorder prediction 278 311 - -
Trre5g00244 311 MobiDBLite consensus disorder prediction 278 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00244 Trre-Chr5 1480235 1481170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00244 76 155 C2H2 Transcription Factor Family AT5G01860 46.250 9.72e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00244 - - tpra:123915384 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00244 5 1480235 1481170 Trre5g00244 5 1480235 1481170 ECH