Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00236 ATGCTAGAGAGGTTGAAAGATGTTGCTGATGAGGCTCAAGCTCAACATTCTGCTTCAATAGTTACTATAAAATCCAAACCTCCGAACCATTTTATATGCCCTATACTTCAGGATGGGATGGAAGATCCTTGTGTTGCCGCAGATGGATATACATACGATCGCAGTGCAATTGAAAAGTGGCTTCAAAAGAATGACAAAGTTGGTCCTTATATTATCATTTGA 222 0.3919 MLERLKDVADEAQAQHSASIVTIKSKPPNHFICPILQDGMEDPCVAADGYTYDRSAIEKWLQKNDKVGPYIII 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00236 73 CDD RING-Ubox_WDSUB1-like 28 65 - -
Trre5g00236 73 Pfam U-box domain 28 69 IPR003613 GO:0004842|GO:0016567
Trre5g00236 73 SMART Ubox_2 30 70 IPR003613 GO:0004842|GO:0016567
Trre5g00236 73 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 69 IPR013083 -
Trre5g00236 73 SUPERFAMILY RING/U-box 23 69 - -
Trre5g00236 73 ProSiteProfiles U-box domain profile. 26 73 IPR003613 GO:0004842|GO:0016567
Trre5g00236 73 PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 14 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00236 Trre-Chr5 1438117 1438551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00236 2 65 U-box Gene Family AT5G61550 59.375 2.55e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00236 - - gsj:114409387 112.464