Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00235 ATGGAGGTGTATAAGTGCACTTTGCATTACACAACTGTTGCTGTTAAAGTTCTTCACTCAAATGGAAACTGCCAAAGCAAGCAATTCCAGCAAGAGTTAGAGATGTTAAGCAGAATTCATCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCACGGATGCCTTGTGTACGAATACATGGAAAATGGAAACTTGGAGGATAGACTACTCCAGAAAAACAGTAATGACCCAATCCCATGGTTTGATAGGTTTCGATTAGCTTGGGAAATTGCCTCGGTCTTTCCTTTCTTCACAGCTCGAAGCCGCAACCTATCATCCATCGCGACTTGA 336 0.4256 MEVYKCTLHYTTVAVKVLHSNGNCQSKQFQQELEMLSRIHHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLQKNSNDPIPWFDRFRLAWEIASVFPFFTARSRNLSSIAT 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00235 111 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
Trre5g00235 111 Pfam Protein tyrosine and serine/threonine kinase 3 99 IPR001245 GO:0004672|GO:0006468
Trre5g00235 111 SUPERFAMILY Protein kinase-like (PK-like) 2 94 IPR011009 -
Trre5g00235 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00235 111 PANTHER OS02G0152300 PROTEIN 2 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00235 Trre-Chr5 1437176 1437737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00235 2 99 U-box Gene Family AT5G51270 68.367 9.96e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre5g00235 PK_Tyr_Ser-Thr 3.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00235 - - jre:108998895 161.77