Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00229 ATGCATCATCTATGGTTATTTACAATCAAATTCATATACCTTTTCTATTTTGCTGCATCTCAGAACAATAGCAATACACAAGCACAACTTAATTATAGATATGCTTGTTTGGAGCAATCTTCTATTGCTCCTTCTACCACATACCAAACCAACCTCGACAATTTAATGTCTTCATTATCATCAGATTCTGCTACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAGTGATCAAAACAATAAGGTTTATGGACTCTATCTTTGTCGTGGCGATGCTAATACAAGTCTTTGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAGACAACACTGTCCTAATAATGCTTCAGCAGTTTTGTGGTACCCCTTTTGTCTTTTGAGGTACTCAAACAATAATTTCTTTGGTAACCTTACTTTAAGACCAAGGATTCCCATGTTTGATGCAAAACAGAATTTGACTAGTGCTGGTGAATTTGATAGTGATGCTAGACTTTTGATGAATGGTTTAATACAAATGGGATCACAGACAGATTTAATGTTTGGAACACATATGTTTAACATAAATGGTACTCAAAGTAGGTATGGTTGGGTGCAATGCAGCAGAGATATTACTAGCGAGGAATGCAGAACTTGTTTGAGTAACTTGCTTGAGGATGTTCAAAATTGTTGTTTGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGCATTATGATGTATGAAACTCAGCCATTCTTTGTGAATGGTACAATTTCTGAGCAAGCCAAAGAAAAGGATGACTCAAGCTCATGGATTATCATAATCATTGTTGTAATTGGAATAGTAGTCGCAGCCATGGTGGCTTTCAGCGCATACTATTTCTGGTGCTTGAAACGTAAAAAAGAGAGATATGCTATGCAAGTCCTTAGTCCAATGTTTTCTCAAGATCAGTCGGACATTGAGGAGAGTGGAAATACTGACCTACCTATGATGACTCTGAGTACCATTCTAAAGAGTACTAATAATTTTTCTGATGAATATAAATTGGGGAAAGGTGGATTTGGAACTGTCTACAAGGGTGTTTTAGCAGATGGAAGGGAAATTGCTGTGAAAAGGCTTTCAAAAACTTCAGCTCAAGGTGTCGAGGAATTAAAAAATGAAATAATATTGATTGCCAAATTGCAACATAGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATTTCCACCTATTTGATATGGCAAAGAGTGCAAAACTAGATTGGAAACAACGATTAAATATTATTAATGGGATTGCTAAAGGGATTCTATATCTTCACGAGGACTCTAGGCTCAGAGTTATTCACAGAGATTTGAAAGCTAGCAATATACTATTAGATCATGAAATGAATCCAAAAGTATCAGACTTTGGACTGGCAAGAGCATTTGGAGGAGATCAGGATGAAGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTATTTTCGGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATAAGTGGAAGAAAAAACAGCAAATTCTATCTTTCGGAGCCTGGACAAAGCCTTCCCATATATGCATGGAACCTTTGGTGCAAAAGAAAAGGTTTGGACTTGATGGATCCATTGATAGAAAAGTCATGTGTACCTAGTGAATATCTGAAGTGTTTACATATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGCAAGTGACACAATGACTCTTACCAGCCCTACACGCCCTGCATTTTCTGTTGGAAGAGATGACGTCAGACGAGCTGTTGTTGAGCAAGAGTCTTCACCAAACACTTCTATCTCTTGCAATGAAGTAACCTTGTCTGAATTGAGGCCTAGATGA 1977 0.3738 MHHLWLFTIKFIYLFYFAASQNNSNTQAQLNYRYACLEQSSIAPSTTYQTNLDNLMSSLSSDSATSNGFGNRTSGSDQNNKVYGLYLCRGDANTSLCHSCVQNSSRLLRQHCPNNASAVLWYPFCLLRYSNNNFFGNLTLRPRIPMFDAKQNLTSAGEFDSDARLLMNGLIQMGSQTDLMFGTHMFNINGTQSRYGWVQCSRDITSEECRTCLSNLLEDVQNCCLEKKVWRIFSPSCIMMYETQPFFVNGTISEQAKEKDDSSSWIIIIIVVIGIVVAAMVAFSAYYFWCLKRKKERYAMQVLSPMFSQDQSDIEESGNTDLPMMTLSTILKSTNNFSDEYKLGKGGFGTVYKGVLADGREIAVKRLSKTSAQGVEELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMAKSAKLDWKQRLNIINGIAKGILYLHEDSRLRVIHRDLKASNILLDHEMNPKVSDFGLARAFGGDQDEANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKNSKFYLSEPGQSLPIYAWNLWCKRKGLDLMDPLIEKSCVPSEYLKCLHIGLLCVQEDAADRPTMSSVVHMLASDTMTLTSPTRPAFSVGRDDVRRAVVEQESSPNTSISCNEVTLSELRPR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00229 658 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Trre5g00229 658 SMART serkin_6 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00229 658 Gene3D Transferase(Phosphotransferase) domain 1 413 619 - -
Trre5g00229 658 FunFam Cysteine-rich receptor-like protein kinase 28 32 133 - -
Trre5g00229 658 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Trre5g00229 658 Pfam Salt stress response/antifungal 41 131 IPR002902 -
Trre5g00229 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 303 412 - -
Trre5g00229 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 23 656 - -
Trre5g00229 658 FunFam Cysteine-rich receptor-like protein kinase 10 144 246 - -
Trre5g00229 658 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Trre5g00229 658 SUPERFAMILY Protein kinase-like (PK-like) 321 636 IPR011009 -
Trre5g00229 658 Gene3D Phosphorylase Kinase; domain 1 299 412 - -
Trre5g00229 658 FunFam Liguleless narrow1 413 616 - -
Trre5g00229 658 Pfam Protein tyrosine and serine/threonine kinase 341 608 IPR001245 GO:0004672|GO:0006468
Trre5g00229 658 Gene3D - 145 246 IPR038408 -
Trre5g00229 658 Gene3D - 29 134 IPR038408 -
Trre5g00229 658 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Trre5g00229 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre5g00229 658 CDD STKc_IRAK 343 608 - -
Trre5g00229 658 ProSiteProfiles Protein kinase domain profile. 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00229 Trre-Chr5 1394475 1398052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00229 34 623 Receptor kinase-like Gene Family AT4G05200 41.653 1.00e-168 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00229 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00229 - - gmx:100798691 1032.71