Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00228 ATGATCAGAAACAGTAACTGTAGCAGCAGAAGAATGCATCATCTATGGTTATTTACAATCAAATTCATATACCTTTTCTATTTTGCTGCATCTCAGAACAATAGCAATACACAAGCACAACTTAATTATAGATATGCTTGTTTGGAGCAATCTTCTATTGCTCCTTCTACCACATACCAAACCAACCTCGACAATTTAATGTCTTCATTATCATCAGATTCTGCTACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAGTGATCAAAACAATAAGGTTTATGGACTCTATCTTTGTCGTGGCGATGCTAATACAAGTCTTTGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAGACAACACTGTCCTAATAATGCTTCAGCAGTTTTGTGGTACCCCTTTTGTCTTTTGAGGTACTCAAACAATAATTTCTTTGGTAACCTTACTTTAAGACCAAGGATTCCCATGTTTGATGCAAAACAGAATTTGACTAGTGCTGGTGAATTTGATAGTGATGCTAGACTTTTGATGAATGGTTTAATACAAATGGGATCACAGACAGATTTAATGTTTGGAACACATATGTTTAACATAAATGGTACTCAAAGTAGGTATGGTTGGGTGCAATGCAGCAGAGATATTACTAGCGAGGAATGCAGAACTTGTTTGAGTAACTTGCTTGAGGATGTTCAAAATTGTTGTTTGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGCATTATGATGTATGAAACTCAGCCATTCTTTGTGAATGGTACAATTTCTGAGCAAGCCAAAGAAAAGGATGACTCAAGCTCATGGATTATCATAATCATTGTTGTAATTGGAATAGTAGTCGCAGCCATGGTGGCTTTCAGCGCATACTATTTCTGGTGCTTGAAACGTAAAAAAGAGAGATATGCTATGCAAGTCCTTAGTCCAATGTTTTCTCAAGATCAGTCGGACATTGAGGAGAGTGGAAATACTGACCTACCTATGATGACTCTGAGTACCATTCTAAAGAGTACTAATAATTTTTCTGATGAATATAAATTGGGGAAAGGTGGATTTGGAACTGTCTACAAGGGTGTTTTAGCAGATGGAAGGGAAATTGCTGTGAAAAGGCTTTCAAAAACTTCAGCTCAAGGTGTCGAGGAATTAAAAAATGAAATAATATTGATTGCCAAATTGCAACATAGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATACTTGCCTAATTCAAGCCTTGATTTCCACCTATTTGATATGGCAAAGAGTGCAAAACTAGATTGGAAACAACGATTAAATATTATTAATGGGATTGCTAAAGGGATTCTATATCTTCACGAGGACTCTAGGCTCAGAGTTATTCACAGAGATTTGAAAGCTAGCAATATACTATTAGATCATGAAATGAATCCAAAAGTATCAGACTTTGGACTGGCAAGAGCATTTGGAGGAGATCAGGATGAAGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGATTATTTTCGGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATAAGTGGAAGAAAAAACAGCAAATTCTATCTTTCGGAGCCTGGACAAAGCCTTCCCATATATGCATGGAACCTTTGGTGCAAAAGAAAAGGTTTGGACTTGATGGATCCATTGATAGAAAAGTCATGTGTACCTAGTGAATATCTGAAGTGTTTACATATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCACATGCTTGCAAGTGACACAATGACTCTTACCAGCCCTACACGCCCTGCATTTTCTGTTGGAAGAGATGACGTCAGACGAGCTGTTGTTGAGCAAGAGTCTTCACCAAACACTTCTATCTCTTGCAATGAAGTAACCTTGTCTGAATTGAGGCCTAGATGA 2010 0.3741 MIRNSNCSSRRMHHLWLFTIKFIYLFYFAASQNNSNTQAQLNYRYACLEQSSIAPSTTYQTNLDNLMSSLSSDSATSNGFGNRTSGSDQNNKVYGLYLCRGDANTSLCHSCVQNSSRLLRQHCPNNASAVLWYPFCLLRYSNNNFFGNLTLRPRIPMFDAKQNLTSAGEFDSDARLLMNGLIQMGSQTDLMFGTHMFNINGTQSRYGWVQCSRDITSEECRTCLSNLLEDVQNCCLEKKVWRIFSPSCIMMYETQPFFVNGTISEQAKEKDDSSSWIIIIIVVIGIVVAAMVAFSAYYFWCLKRKKERYAMQVLSPMFSQDQSDIEESGNTDLPMMTLSTILKSTNNFSDEYKLGKGGFGTVYKGVLADGREIAVKRLSKTSAQGVEELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDMAKSAKLDWKQRLNIINGIAKGILYLHEDSRLRVIHRDLKASNILLDHEMNPKVSDFGLARAFGGDQDEANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGRKNSKFYLSEPGQSLPIYAWNLWCKRKGLDLMDPLIEKSCVPSEYLKCLHIGLLCVQEDAADRPTMSSVVHMLASDTMTLTSPTRPAFSVGRDDVRRAVVEQESSPNTSISCNEVTLSELRPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00228 669 FunFam Cysteine-rich receptor-like protein kinase 28 43 144 - -
Trre5g00228 669 Pfam Protein tyrosine and serine/threonine kinase 352 619 IPR001245 GO:0004672|GO:0006468
Trre5g00228 669 Gene3D - 40 145 IPR038408 -
Trre5g00228 669 Gene3D - 156 257 IPR038408 -
Trre5g00228 669 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre5g00228 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 667 - -
Trre5g00228 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 314 423 - -
Trre5g00228 669 ProSiteProfiles Gnk2-homologous domain profile. 152 257 IPR002902 -
Trre5g00228 669 SMART serkin_6 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00228 669 SUPERFAMILY Protein kinase-like (PK-like) 332 647 IPR011009 -
Trre5g00228 669 Gene3D Transferase(Phosphotransferase) domain 1 424 630 - -
Trre5g00228 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Trre5g00228 669 CDD STKc_IRAK 354 619 - -
Trre5g00228 669 ProSiteProfiles Gnk2-homologous domain profile. 41 145 IPR002902 -
Trre5g00228 669 FunFam Liguleless narrow1 424 627 - -
Trre5g00228 669 ProSiteProfiles Protein kinase domain profile. 348 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00228 669 Pfam Salt stress response/antifungal 52 142 IPR002902 -
Trre5g00228 669 Pfam Salt stress response/antifungal 162 254 IPR002902 -
Trre5g00228 669 FunFam Cysteine-rich receptor-like protein kinase 10 155 257 - -
Trre5g00228 669 Gene3D Phosphorylase Kinase; domain 1 310 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00228 Trre-Chr5 1394442 1398052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00228 45 634 Receptor kinase-like Gene Family AT4G05200 41.653 1.47e-168 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00228 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00228 - - gmx:100798691 1044.26