Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00227 ATGCATCATCTATGGTTATTTACAATCAAATTCATATACCTTTTCTATTTTGCTGCATCTCAGAACAATAGCAATACACAAGCACTACTTAATTATAGATATGCTTGTTTGGATCAATCTTCTATTGCTCCTTCTACCACATACCGAACCAACCTCGACAATTTAATGTCTTCATTATCATCAGATTCTGCTACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAGTGATCAAAACAATAAGGTTTATGGACTCTATCTTTGTCGTGGCGATGCTAATACAAGTCTATGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAGACAACACTGTCCTAATAATGCTTCAGCAATTTTGTGGTACCCCTTTTGTGTTTTGAGGTACTCAAACAATAATTTCTTTGGTATCCTTACTTTAAGACCAAGGGTTCCCATGTTTGATGCAAAACAAAATTTGACTAGTGCTGGTGAATTTGATAGTGATGCTAGACTTTTGATGAATGGTTTAATACAAATGGGATCACAGACAGATTTAAAGTTTGGAACACATATGTTTAACATAAATGGTACTCAAAGTAGGTATGGTTGGGTGCAATGCACCAGAGATATTACTAGCGAGGAATGCAGAACTTGTTTGAGTAACTTGCTTGAGGATGTTCAAAATTGTTGTTTGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGCTTTATGATGTATGAAACTCAGCCATTCTTTGTGAATGGTACAATTTCTGAGCAAGCCAAAGAAAAGGATGACTCAAGGTCATGGATTATCATAATCATTGTTGTAATTGGAATAGTAGTCGCAGCCCTATTGGCTTTCAGCGCATACTATTTCCGGTGCTTGAAACGTAAGAAAGAGAGAAATGCTATGCAAGTCCTTAGTCCAATGTTTTCTCAAGATCAGTCTGACATTGAGGAGACTGGAAATACTGACCTGCCTATGATGCCTCTGAGTACCATTCTAAAGAGTACTAACAATTTTTCTGATGAATATAAATTGGGGAAAGGTGGATTTGGAACTGTCTACAAGGGTGTTTTAGCAGATGGAAGGGAAATTGCTGTGAAAAGGCTTTCAAAAACTTCAGCTCAAGGTGTGAAGGAATTAAAAAATGAAATAATATTGATTGCCAAATTGCAGCATAGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATATTTGCCGAATTCAAGCCTTGATTTCCACCTATTTGATGATGAAAAAAGAAAACTTCTAGATTGGAAGTTGAGATTGAACATTATAAATGGAATTGCAAAAGGACTCTTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTGCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAACGGCATTTGAAAAAGACCAATGTCAAGAAAATACTAAAAGAGTTGTGGGCACATATGGATACATGTCTCCAGAGTATGCTATGAAGGGATTATATTCAGTGAAGTCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAGATAATTTGTGGAAAAAAAATTAGAAATTTCAATCTTGAAGAACATGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTATGAAGGGAAAAGTTTGGAACTTTTGGATCCAATATTGAAAGAGACATACATAGCAAATGAAGTTGTGAGGTGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCAAATGTTGTTGTCATGCTTGCAAGTGATACAATGGCACTTCCAAATCCTAATGATCCTGCATTTTCAGTTGGTAGAAAACTCAAGGAATATGAATCAACTTCAAAAGCTTCCAATGATCCTTCTGTTAATGAAGTTACAATATCAAATGTTTTCCCTAGGTAG 1968 0.3557 MHHLWLFTIKFIYLFYFAASQNNSNTQALLNYRYACLDQSSIAPSTTYRTNLDNLMSSLSSDSATSNGFGNRTSGSDQNNKVYGLYLCRGDANTSLCHSCVQNSSRLLRQHCPNNASAILWYPFCVLRYSNNNFFGILTLRPRVPMFDAKQNLTSAGEFDSDARLLMNGLIQMGSQTDLKFGTHMFNINGTQSRYGWVQCTRDITSEECRTCLSNLLEDVQNCCLEKKVWRIFSPSCFMMYETQPFFVNGTISEQAKEKDDSRSWIIIIIVVIGIVVAALLAFSAYYFRCLKRKKERNAMQVLSPMFSQDQSDIEETGNTDLPMMPLSTILKSTNNFSDEYKLGKGGFGTVYKGVLADGREIAVKRLSKTSAQGVKELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDDEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLATAFEKDQCQENTKRVVGTYGYMSPEYAMKGLYSVKSDVFSFGVLLLEIICGKKIRNFNLEEHGQSLLIYSWNLWYEGKSLELLDPILKETYIANEVVRCIHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPNPNDPAFSVGRKLKEYESTSKASNDPSVNEVTISNVFPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00227 655 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Trre5g00227 655 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Trre5g00227 655 Pfam Domain of unknown function (DUF3403) 610 655 IPR021820 GO:0004674
Trre5g00227 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 651 - -
Trre5g00227 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 303 412 - -
Trre5g00227 655 Pfam Protein kinase domain 338 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00227 655 Gene3D Transferase(Phosphotransferase) domain 1 413 617 - -
Trre5g00227 655 Gene3D Phosphorylase Kinase; domain 1 298 412 - -
Trre5g00227 655 Gene3D - 30 134 IPR038408 -
Trre5g00227 655 Gene3D - 145 246 IPR038408 -
Trre5g00227 655 SUPERFAMILY Protein kinase-like (PK-like) 322 624 IPR011009 -
Trre5g00227 655 ProSiteProfiles Protein kinase domain profile. 337 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00227 655 FunFam Cysteine-rich receptor-like protein kinase 28 32 133 - -
Trre5g00227 655 FunFam Cysteine-rich receptor-like protein kinase 10 144 246 - -
Trre5g00227 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre5g00227 655 SMART serkin_6 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00227 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 413 616 - -
Trre5g00227 655 Pfam Salt stress response/antifungal 41 131 IPR002902 -
Trre5g00227 655 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Trre5g00227 655 CDD STKc_IRAK 343 608 - -
Trre5g00227 655 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00227 Trre-Chr5 1388850 1392045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00227 34 655 Receptor kinase-like Gene Family AT4G05200 41.463 3.65e-174 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00227 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00227 - - gmx:100798691 964.526