Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00226 ATGATCAGAAACAGTAACTGTAGCAGCAGAAGAATGCATCATCTATGGTTATTTACAATCAAATTCATATACCTTTTCTATTTTGCTGCATCTCAGAACAATAGCAATACACAAGCACTACTTAATTATAGATATGCTTGTTTGGATCAATCTTCTATTGCTCCTTCTACCACATACCGAACCAACCTCGACAATTTAATGTCTTCATTATCATCAGATTCTGCTACAAGCAATGGTTTTGGAAATAGAACTTCAGGTAGTGATCAAAACAATAAGGTTTATGGACTCTATCTTTGTCGTGGCGATGCTAATACAAGTCTATGTCATTCATGTGTTCAAAACTCTAGCAGATTGCTCAGACAACACTGTCCTAATAATGCTTCAGCAATTTTGTGGTACCCCTTTTGTGTTTTGAGGTACTCAAACAATAATTTCTTTGGTATCCTTACTTTAAGACCAAGGGTTCCCATGTTTGATGCAAAACAAAATTTGACTAGTGCTGGTGAATTTGATAGTGATGCTAGACTTTTGATGAATGGTTTAATACAAATGGGATCACAGACAGATTTAAAGTTTGGAACACATATGTTTAACATAAATGGTACTCAAAGTAGGTATGGTTGGGTGCAATGCACCAGAGATATTACTAGCGAGGAATGCAGAACTTGTTTGAGTAACTTGCTTGAGGATGTTCAAAATTGTTGTTTGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGCTTTATGATGTATGAAACTCAGCCATTCTTTGTGAATGGTACAATTTCTGAGCAAGCCAAAGAAAAGGATGACTCAAGGTCATGGATTATCATAATCATTGTTGTAATTGGAATAGTAGTCGCAGCCCTATTGGCTTTCAGCGCATACTATTTCCGGTGCTTGAAACGTAAGAAAGAGAGAAATGCTATGCAAGTCCTTAGTCCAATGTTTTCTCAAGATCAGTCTGACATTGAGGAGACTGGAAATACTGACCTGCCTATGATGCCTCTGAGTACCATTCTAAAGAGTACTAACAATTTTTCTGATGAATATAAATTGGGGAAAGGTGGATTTGGAACTGTCTACAAGGGTGTTTTAGCAGATGGAAGGGAAATTGCTGTGAAAAGGCTTTCAAAAACTTCAGCTCAAGGTGTGAAGGAATTAAAAAATGAAATAATATTGATTGCCAAATTGCAGCATAGAAACCTTGTGAGACTATTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTATCTATGAATATTTGCCGAATTCAAGCCTTGATTTCCACCTATTTGATGATGAAAAAAGAAAACTTCTAGATTGGAAGTTGAGATTGAACATTATAAATGGAATTGCAAAAGGACTCTTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTGCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAACGGCATTTGAAAAAGACCAATGTCAAGAAAATACTAAAAGAGTTGTGGGCACATATGGATACATGTCTCCAGAGTATGCTATGAAGGGATTATATTCAGTGAAGTCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAGATAATTTGTGGAAAAAAAATTAGAAATTTCAATCTTGAAGAACATGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTATGAAGGGAAAAGTTTGGAACTTTTGGATCCAATATTGAAAGAGACATACATAGCAAATGAAGTTGTGAGGTGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCAAATGTTGTTGTCATGCTTGCAAGTGATACAATGGCACTTCCAAATCCTAATGATCCTGCATTTTCAGTTGGTAGAAAACTCAAGGAATATGAATCAACTTCAAAAGCTTCCAATGATCCTTCTGTTAATGAAGTTACAATATCAAATGTTTTCCCTAGGTAG 2001 0.3563 MIRNSNCSSRRMHHLWLFTIKFIYLFYFAASQNNSNTQALLNYRYACLDQSSIAPSTTYRTNLDNLMSSLSSDSATSNGFGNRTSGSDQNNKVYGLYLCRGDANTSLCHSCVQNSSRLLRQHCPNNASAILWYPFCVLRYSNNNFFGILTLRPRVPMFDAKQNLTSAGEFDSDARLLMNGLIQMGSQTDLKFGTHMFNINGTQSRYGWVQCTRDITSEECRTCLSNLLEDVQNCCLEKKVWRIFSPSCFMMYETQPFFVNGTISEQAKEKDDSRSWIIIIIVVIGIVVAALLAFSAYYFRCLKRKKERNAMQVLSPMFSQDQSDIEETGNTDLPMMPLSTILKSTNNFSDEYKLGKGGFGTVYKGVLADGREIAVKRLSKTSAQGVKELKNEIILIAKLQHRNLVRLLACCIEQNEKLLIYEYLPNSSLDFHLFDDEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLATAFEKDQCQENTKRVVGTYGYMSPEYAMKGLYSVKSDVFSFGVLLLEIICGKKIRNFNLEEHGQSLLIYSWNLWYEGKSLELLDPILKETYIANEVVRCIHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPNPNDPAFSVGRKLKEYESTSKASNDPSVNEVTISNVFPR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00226 666 ProSiteProfiles Gnk2-homologous domain profile. 41 145 IPR002902 -
Trre5g00226 666 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 314 423 - -
Trre5g00226 666 ProSiteProfiles Protein kinase domain profile. 348 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00226 666 SUPERFAMILY Protein kinase-like (PK-like) 333 635 IPR011009 -
Trre5g00226 666 Gene3D - 156 257 IPR038408 -
Trre5g00226 666 Gene3D - 41 145 IPR038408 -
Trre5g00226 666 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 424 627 - -
Trre5g00226 666 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre5g00226 666 SMART serkin_6 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00226 666 FunFam Cysteine-rich receptor-like protein kinase 28 43 144 - -
Trre5g00226 666 Pfam Domain of unknown function (DUF3403) 621 666 IPR021820 GO:0004674
Trre5g00226 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Trre5g00226 666 CDD STKc_IRAK 354 619 - -
Trre5g00226 666 Gene3D Transferase(Phosphotransferase) domain 1 424 628 - -
Trre5g00226 666 FunFam Cysteine-rich receptor-like protein kinase 10 155 257 - -
Trre5g00226 666 Pfam Protein kinase domain 349 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00226 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 662 - -
Trre5g00226 666 Gene3D Phosphorylase Kinase; domain 1 309 423 - -
Trre5g00226 666 Pfam Salt stress response/antifungal 52 142 IPR002902 -
Trre5g00226 666 Pfam Salt stress response/antifungal 162 254 IPR002902 -
Trre5g00226 666 ProSiteProfiles Gnk2-homologous domain profile. 152 257 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00226 Trre-Chr5 1388817 1392045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00226 45 666 Receptor kinase-like Gene Family AT4G05200 41.463 4.53e-174 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00226 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00226 - - gmx:100798691 976.081