Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00225 ATGGCAACAAAACTCAAACTCATAATTTCCATCCTTAGATTTCTTAGCTTCATGACCCTTTTCACAAAATCAATTGCACAATCTCCAAACTATGTAGGTGATGATTGTAAAAACTCAACACAACAATCTCTTACATCTACATACAAATCAAACCTTAACAAAGTCCTCTCATTGCTTTCCTCTGATGCTATTGTAAGCAAAGGATATAATCACACAAGCATAGGTGACAACACAATTGATGGTGTCTATGGTCTCTATGATTGTAGGGGTGATGTTGTAGGTTCATTTTGTCAATTTTGTGTCTCTACTGCTGCCTCAGATATTCTTCAACGCTGTCCTAATAAAGCCTCAGCTACTATATGGTACAACTTTTGCATTCTCAGATATTCCAATCATAATTTTTTTGGAAAGCTAACAACAGATCCATCATGGAACAAATCTGGGTCAGAAAAGATCAATAATCCACAAGAACTTGAGAAAGCTGAGGATAATATGCAAAGTTTGATCAAAGAAGCTACTTTGGATACCAAAAAATTATTTGCAATGAGTGAGTTCAATTTGAGTACCAATAAAAAAAGATATGGATTGGTGCAGTGTAGTAGGGACCTTAATGACAAGCAATGTAATCAATGTTTGGAGGCCATGTTGGACAAAGTTCCTAAATGCTGTGCTACAAAGATTAGTTGGCAAGTTCTTGCTCCAAGTTGTTTGATAAAATATGATAATGTTATGTTTTATCAACTTATTTCTCAAACATCAACTCCAGGCGCCGGGCAAGGAGGTTCAAATAAATCAAATACCTTGACCATCACCATAGTCATTGTATTGGTGGTTGCAGTTGCTCTCATTACTTGTTGTATCTACTTCATATGGAGGCGTAATCATTCAAATAAAGACGGACTACAATCAGAGACAATTCCTATATATCTTCGTGATCATAAAGAAAGCGATTCATTAAATCCTGACCTCCCAATAATCCCTTTAACTTGGATTAGACAGAGTACTAATAACTTTTCCGAGTTAAGTAAACTAGGAGAAGGTGGATTTGGCCCCGTTTACAAGGGTAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTATCTATAACATCTGGTCAAGGTTCACAAGAGTTCCAAAATGAAGTTATCTTTATAGCTAAATTGCAACATAGAAACCTTGTTAGACTTTTGGGTTGTTGCATTGAGGATAATGAAAAGTTGCTTGTATATGAGTACATGCCAAACTCTAGCCTTGACTTTCATCTATTTGATGATGAAAAAAGAAAACTTCTAGATTGGAAGTTGAGATTGAACATTATTAATGGAATTGCTAAAGGACTATTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACTTAAAAGCTGGTAATGTTCTGCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGACCAATGTCAAGAAAATACAAAAAGAGTTGTGGGCACATATGGATACATGTCTCCAGAGTATGCTATGGAGGGATTATATTCGGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAGATAATTTGTGGAAAAAAAATTAGAAATTTCAATCTTGAAGAACACGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTATGAAGGGAAAAGTTTGGAACTTTTGGATCCAATATTGAAAGAGACATACATAGCAAATGAAGTTGTGAGGTGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCAAATGTTGTTGTCATGCTTGCAAGTGATACAATGGCACTTCCAAATCCTAATGATCCTGCATTTTCAGTTGGTAGAAAACTCAAGGAAGATGAATCAACTTCAAAAGCTTCCAATGATCCTTCTGTTAATGAAGTTACAATATCAAATATTTTCCCTAGGTAG 1971 0.3521 MATKLKLIISILRFLSFMTLFTKSIAQSPNYVGDDCKNSTQQSLTSTYKSNLNKVLSLLSSDAIVSKGYNHTSIGDNTIDGVYGLYDCRGDVVGSFCQFCVSTAASDILQRCPNKASATIWYNFCILRYSNHNFFGKLTTDPSWNKSGSEKINNPQELEKAEDNMQSLIKEATLDTKKLFAMSEFNLSTNKKRYGLVQCSRDLNDKQCNQCLEAMLDKVPKCCATKISWQVLAPSCLIKYDNVMFYQLISQTSTPGAGQGGSNKSNTLTITIVIVLVVAVALITCCIYFIWRRNHSNKDGLQSETIPIYLRDHKESDSLNPDLPIIPLTWIRQSTNNFSELSKLGEGGFGPVYKGNLVDGTEVAIKRLSITSGQGSQEFQNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFDDEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKAGNVLLDQEMNPKISDFGLARAFEKDQCQENTKRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKKIRNFNLEEHGQSLLIYSWNLWYEGKSLELLDPILKETYIANEVVRCIHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPNPNDPAFSVGRKLKEDESTSKASNDPSVNEVTISNIFPR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00225 656 Gene3D Transferase(Phosphotransferase) domain 1 414 618 - -
Trre5g00225 656 Pfam Domain of unknown function (DUF3403) 611 656 IPR021820 GO:0004674
Trre5g00225 656 Pfam Protein tyrosine and serine/threonine kinase 342 606 IPR001245 GO:0004672|GO:0006468
Trre5g00225 656 SMART serkin_6 338 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00225 656 SUPERFAMILY Protein kinase-like (PK-like) 321 626 IPR011009 -
Trre5g00225 656 FunFam Cysteine-rich receptor-like protein kinase 28 32 133 - -
Trre5g00225 656 Gene3D Phosphorylase Kinase; domain 1 307 413 - -
Trre5g00225 656 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 652 - -
Trre5g00225 656 Gene3D - 30 134 IPR038408 -
Trre5g00225 656 Gene3D - 143 245 IPR038408 -
Trre5g00225 656 CDD STKc_IRAK 344 609 - -
Trre5g00225 656 MobiDBLite consensus disorder prediction 626 656 - -
Trre5g00225 656 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Trre5g00225 656 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Trre5g00225 656 MobiDBLite consensus disorder prediction 639 656 - -
Trre5g00225 656 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Trre5g00225 656 Pfam Salt stress response/antifungal 162 242 IPR002902 -
Trre5g00225 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 304 413 - -
Trre5g00225 656 Coils Coil 158 178 - -
Trre5g00225 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 414 617 - -
Trre5g00225 656 ProSiteProfiles Protein kinase domain profile. 338 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00225 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00225 Trre-Chr5 1381511 1387528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00225 1 656 Receptor kinase-like Gene Family AT4G05200 42.504 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00225 PK_Tyr_Ser-Thr 9.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00225 - - mtr:25490357 977.237