Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00224 ATGGCAACAAAACTCAAACTCATAATTTCCATACTTAGATTTCTTAGCTTCATGACCCTTTTAACAAAATCAGTTGCACAATCTCCAAACTATGTAGGTGATGATTGTAAAAACTCAACACAACAATCTCTTACATCTACATACAAATCAAACCTTAACAAAGTTCTCTCATTGCTTTCCTCTGATGCTATTGTAAGCAAAGGATATAATCACACAAGCATAGGTGACAACACAGTTGATGGTGTCTATGGTCTCTATGATTGTAGGGGTGATGTTGTAGGTTCATTTTGTCAATTTTGTGTTTCTACTGCTGCCTCGGATATTCTTCAACACTGTCCTAATAGAGCCTCAGCTACTATATGGTACAACTTTTGCATTCTCAGATACTCCAATCGTAATTTCTTTGGAAAGCTAACAACAGATCCATCATGGAACAAATCTGGGTCAGAAAAGATCAATAATCCACAAGAACTTGATAAAGCTGAGGATAATATGCAAAGTTTGATCAAAGAAGCTACTTTGGATACAAAAAAATTATTTGCAATGAGTGAGTTCAATTTGAGTACCAATAAGAAAAGATATGGATTGGTGCAGTGTAGTAGGGACCTTAATGACAAGCAATGTAATCAATGTTTGGAGGACTTGTTAGACAAAGTTCCTAAATGTTGTGGTACAAATATTGGTTGGCAAGTTGTTGCTCCAAGTTGTTTGATAAAATACGATGATGTTATGTTTTATCAACTTATTTCTCAAACTTCTACTCCTTTGCCAGTCGGGCAAGGAGGTTCAAATAAATCAAATACCTTGATCATCATCATAGTGATTGTGTTGGTGGTGGCAGTTGCTCTCATGAGTTGTTGTATATACTTCATATGGAGGCGTAATCATTCCAATCAAGATGAACTACAATCAGAGACAATTCCTATATCTCTTCATAATCGTAAAGAAAACGAGTCATTAAATCACGAACTTCCAATAATCCCTCTAACTTGGATTAAACGGAGTACCAATAACTTTTCCGAGTTATGTAAACTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGCAATTTATTAGATGGAACAGAAGTTGCAATCAAAAGGCTATCTATAACATCCGGTCAAGACTTTCATCTATTTGGTACTGATGATGGAAAAAGAGAACTTCTAGATTGGAAGTTAAGATTGAACATTATTAATGGAATTGCAAAAGGACTATTGTACCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACTTAAAAGCTAGTAATGTTCTGCTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGACCAATGCCAAGAAAATACAAGAAGAGTTGTGGGCACATATGGATACATGTCTCCAGAGTATGCTATGGAGGGGTTATATTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTTTTATTAGAGATAATTTGTGGAAAAAGAAATAGTGGATTCTATCTCGGAGAACACGGTCAAAGTCTTCTTATATACAGTTGGAATCTTTGGTATGAAGGAAAAAGTTTGGAGCTTTTAGATCCAATATTGAAGAAGACATACATAGCCAATGAAGTTGTGAGATGCATACACATTGGTTTGTTGTGTGTACAAGAAGATGCAATTGATAGACCAACCATGTCAAATGTTGTTGTTATGCTTGCAAGTGATACAATGGCACTTCCCAATCCTAATAATCCTGCATTTTCAGTTGGAAGAAAATTCAAGGAAGATGAATCAACTTCAAAAACTTCCAATGATCCTTCTGTTAATGAAGTTACAGTATCAAATATTTTCCCTAGGTAG 1845 0.3539 MATKLKLIISILRFLSFMTLLTKSVAQSPNYVGDDCKNSTQQSLTSTYKSNLNKVLSLLSSDAIVSKGYNHTSIGDNTVDGVYGLYDCRGDVVGSFCQFCVSTAASDILQHCPNRASATIWYNFCILRYSNRNFFGKLTTDPSWNKSGSEKINNPQELDKAEDNMQSLIKEATLDTKKLFAMSEFNLSTNKKRYGLVQCSRDLNDKQCNQCLEDLLDKVPKCCGTNIGWQVVAPSCLIKYDDVMFYQLISQTSTPLPVGQGGSNKSNTLIIIIVIVLVVAVALMSCCIYFIWRRNHSNQDELQSETIPISLHNRKENESLNHELPIIPLTWIKRSTNNFSELCKLGEGGFGPVYKGNLLDGTEVAIKRLSITSGQDFHLFGTDDGKRELLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFEKDQCQENTRRVVGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFYLGEHGQSLLIYSWNLWYEGKSLELLDPILKKTYIANEVVRCIHIGLLCVQEDAIDRPTMSNVVVMLASDTMALPNPNNPAFSVGRKFKEDESTSKTSNDPSVNEVTVSNIFPR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00224 614 SUPERFAMILY Protein kinase-like (PK-like) 322 588 IPR011009 -
Trre5g00224 614 FunFam Liguleless narrow1 372 575 - -
Trre5g00224 614 Gene3D Phosphorylase Kinase; domain 1 312 380 - -
Trre5g00224 614 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 376 610 - -
Trre5g00224 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Trre5g00224 614 Pfam Protein tyrosine and serine/threonine kinase 389 565 IPR001245 GO:0004672|GO:0006468
Trre5g00224 614 SMART serkin_6 339 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00224 614 ProSiteProfiles Protein kinase domain profile. 252 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g00224 614 Gene3D - 30 134 IPR038408 -
Trre5g00224 614 Gene3D - 143 245 IPR038408 -
Trre5g00224 614 Pfam Domain of unknown function (DUF3403) 569 614 IPR021820 GO:0004674
Trre5g00224 614 Gene3D Transferase(Phosphotransferase) domain 1 381 576 - -
Trre5g00224 614 FunFam Cysteine-rich receptor-like protein kinase 28 32 133 - -
Trre5g00224 614 MobiDBLite consensus disorder prediction 585 604 - -
Trre5g00224 614 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Trre5g00224 614 Pfam Salt stress response/antifungal 162 242 IPR002902 -
Trre5g00224 614 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Trre5g00224 614 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00224 Trre-Chr5 1371502 1379015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00224 10 614 Receptor kinase-like Gene Family AT4G05200 38.620 6.19e-152 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre5g00224 PK_Tyr_Ser-Thr 1.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00224 - - mtr:25490357 873.233