Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00219 ATGGGTTTTGAACCATTGATTTGGTATTGCAAGCCAGAACCGAATAGTATTTGGGAAAAGATAGGAGATAGTGCTTTTGGATCTTATACACCTTGTGCAATCAACACTCTTGTTTTCTCAATCTCAAATTTGGTTCTTATGTTTCTTTGCTTATATAGAATATGGCTTATTGCTTTCAATGCCAAAGCTCAAAGCTTTTGTTTGAAATCAAATTACTATAATTATATTCTTGGAATGTTGGCTAGTTATTGTGCTTTTCAGCCTTTGTTGAGATTGTTCACAGGAAATTCAGTCTTCAACCTGAATGAGGAAACTGATTTTACTCCTTTTGAGATAACATCTTTGATCATTGAATCACTTACTTGGTTCTCGATGATAATTCTCATCCTCTTGGAAACTAAGGTTTATATTAGGCAATTTAGGTGGTTGGTGAGGTTTGGAGTTATTTATGTTTTGGTGGGAGATATTGTAATGCTTGACCTTCTTCTGTCAGTGAAAGAATATTACTCTAGCAGATCTTCCCTATATCTGTATATCAGCACTATTATCTGCCAGGTGTTGTTTGGCACCTTACTTCTAGTTTACATTCCTAATTTGGTTCCATATTCTGGTCATACAACAATGCAAGCTGAGATACCTGACAATGGAGCATATGAACCACTTCGTGGAGACGATCAAGTTTGCCCCGAGATGTGTGCCAGTATTTTATCTAGATTAAGTTTTGGATGGATAACGCCACTTATGAAACAAGGCTACAGAAAACCAATCACCGAAAAGGATGTATGGAAGCTAGACAAATGGGATCAAACTGAGACATTAAATGAAAATTTCCAAAGGTGTTGGATGTCAGAATTTGAAAGCTCTAACCCTTGGCTTTTAAGAGCATTAAACAGTAGTCTAGGGAAAAGGTTTTGGATTGGAGGCATCTTTAAGATTGGTAATGATCTTTCTCAATTTGTGGGGCCAATTTTGCTGAACCATCTCTTAGCTTCAATGCAAAATGGAGATCCGTCTTGGATCGGTTACATCTACGCCTTCTCCATATTTGTTGGAGTGTCAGTTGGTATTCTATTTGAGTCACGGTATTACCATAATGTGTTGTGCGTTGGATTTCGCCTTAGATCAACATTGGTGGCTGCTATATTCAGAAAATCTTTGAGGCTAACTCATGAAAGTAGAAAGAATTTCTCAATGGGGAAGCTTATGAATATGATAACAACCGATGCCAATGCATTACAGCAAATATGCGAACAACTTCATGGACTATGGTCAGCACCATTTCAAATCATCATAGCTATGGTTCTTCTATACCAGCAACTAGGTGTTGCTTCACTTGTTGGATCACTAATACTAGTTCTCATTATTCCACTACAGGCATTTATGAATGACAAAATGAGAAAACTGACAAAGGAAGGACTGCAACAGACGGACAAAAGGGTTGGTCTGATGAACGAAATTCTTTCTGCCATGGATACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATTCGACATGAAGAACTATCATGGTTCCGCAAATCACAGCTTCTATATGCTCTAAACAGATTTATGCTGAACAGCATCCCAGTTCTTGTGACAGTAACTTCCTTTGGAATGTTTACTTTACTTGGTGGAGAATTGACACCTGCAAGGGCATTTACCTCACTATCGCTGTTTTCGGTTTTGCGCTTTCCTTTAAATATGCTTCCAAAGTTACTAAGTCAGGTAGCAAATGCGAATGTCTCCTTGCAACGTTTGGAGGTACTGTTTTCGGCTGAGGAACGAAATTTACAACAAAATCCACCTATTGTTCCAGGACTTCCAGCCATATCAATAAAAAATGGTGATTTTTCATGGGATCCTAAGGCAGAGAAGGCTACATTGTCAAATATCAATTTTGAAATACCAGTTGGAAGCTTAGTTGCAATTATTGGAGGTACCGGAGAAGGGAAAACATCACTTATTTCAGCAATGCTTGGAGAGCTACCTCTTGTATCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACACTTCGCGAAAATATACTATTTGGATCAAAGTTCGATCATGGACGGTATTGGAAGTCCATCGATGTCACTTCTTTGGGACATGATCTCAATTTTTTACCAGGGCGCGATTTTACCGAGATTGGGGAAAGAGGCGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCTTTAGCTAGGGCTGTATACTCAGATTCTGATGTATATATACTTGATGATCCTTTAAGTGCTCTTGATGCTCATATTGCCCAAGAGGTTTTCGTGAACTGTATAAAGGAAGGGCTGCAAGGAAAAACAAGGGTTCTTGTTACCAACCAGCTTCATTTTCTCCCTCAGGTTGATAAAATAATTCTGGTTAATGAAGGCATGATAACGGAGCAAGGAACATTCGAGGAGTTGTCGAAATGTGGGCCTTTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGTTGATAGTACCGAAGATACGGATAGTCATGAAAAGACTGATGTTTTACCCTTGAATAATGAGGCAATTGTAGAGTTACCAAATGATACAAGCTATGAGAAGAAGGGAAAATTGCAAAAATCGGTACTTGTTAAGAAAGAAGAGAGGGAGACAGGAGTGGTTAGTTGGAAAGTTTTAATGAGATACACGTCTGCTTTGGGAGGACTGTGGGTAGTTTCTATACTTTTTGCATGCTACACATTAACAGAAGCTCTTCGAATTTCGAGTAGCACATGGTTAAGTGTGTGGACATCTCAAGATTCAACTGCAGCTTCTCGAGCAGGATATTTTCTTATCATCTATGCAATTTTTTCATTTGGACAGGTATCTGTGGCACTAGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCGTGCTGCAAAAAAATTGCACGATGCAATGCTAGATAAGATCCTACGTGCTCCAATGGTATTCTTCCAGACTAATCCTGTCGGCCGCATAATTAATAGATTTGCGAAAGACACGGGAGACATAGATACCGATGTTTTTAATTTGATGAATACGTTTTTGGGGCAAGTCTGGCAACTACTTTCAACATTTGTTCTTATAGGCACTGTGAGCTCCATATCCCTGTGGGCCATATTGCCACTTCTGATCTTTTTTTATGCTGCTTATACATATTACCAGAGCACAGCTCGGGAGGTGAAGCGCATGGATTCTATTACAAGATCACCTGTTTATGCACATTTTGGAGAATCATTGAACGGTTTGTTGAGCATTCGGGCTTACAAAGCGTATGACAGGATGTCAAGCATCAATGGAAATTTCATGGATAACAATATCAGATTTACTCTTGTGATTATTGGTTCGAACAATTGGCTGGCTGTACGGTTAGAAATCTTAGGAGGCCTCATGATTTGGTTAATAGCAACATTTGCCGTCTTACAAAATGCAAGATCTGAAAACCCTGCAATGATTGCGTCTACAATGGGTCTACTTCTCAGTTATACATTAAACATAACAAGTCTCTTGAGCGGTGTACTTAGACAAGCGAGTAGAGCTGAAAACAGTTTAAATTCAGTCGAACGTGTTGACACGTATATAAATTTAGAAACCGAGGGTCAAAGTATAATTGAGACAAACCGTCCACCACCAGGCTGGCCAACAAAAGGATCAATTGAGTTTGAGAATGTTGTTCTGAGGTATAGGCCGGAACTTCCTCCGGTCCTGCACGGATTGTCCTTTGTGGTGCCTTCAACTGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCAGGAAAGTCGAGCATGCTTAATGCATTATTTCGGATTGTTGAACTACAAAGTGGAAGAATCATTATTGATGGTTATGATATTTCTACGGTCGGACTAGTAGATTTGCGAAGAGTTCTTACTATCATACCACAGTCGCCTGTTCTTTTCTCTGGTACTGTTCGTTTCAATCTCGATCCATTTGACGAATACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCACACTTGAAAGATGTAATAAGAAGAAATTCATTTGGTCTAGATGCCCAGGTTTCTGAAGGAGGTGACAATTTCAGTGTCGGACAAAGGCAACTATTAAGTCTAGCGAGAGCATTGCTAAGAAGATCAAAGGTTCTTGTCCTTGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCACTTATACAGAAAACTATCCGACAAGAATTTCATTCCTGCACAATGCTCATCATTGCTCACAGATTGAATACAGTTATCGACTGCAACCGGATTCTGTTGCTAGATGCTGGCAAGGTTCTTGAATACAATTCACCTGAGAAACTCTTACAAAATGAAGAAACTGCATTCTACAAAATGGGAGTCGGAAAATCGTCTGAGACAGTTAGATCTACAAATTGGGCTGCTTCTACACAATTTGCAATAGCTTCCAGCCTTTCTTCTTTACATCAACATCTTCAAAGTCCAAATACTAAAGACAGTAAAGACATTCTTAATAGAACAAAGGATGCAGTAATTACACTTCAAGAAGTTCTAGAAGGAAAGCATGATGAAACTATAGAAGAGACATTGACTCAATATCATGTTCCTAGAGATAGATGGTGGTCTACTCTCTATAAAATTATTGAAGATCTAGCTCTCTTGATCAAGTTGCCTCAAGACAACTTTCAACAATTAGAACCTGATTTTAAAGGGAGATCATTTGACTAA 4764 0.3887 MGFEPLIWYCKPEPNSIWEKIGDSAFGSYTPCAINTLVFSISNLVLMFLCLYRIWLIAFNAKAQSFCLKSNYYNYILGMLASYCAFQPLLRLFTGNSVFNLNEETDFTPFEITSLIIESLTWFSMIILILLETKVYIRQFRWLVRFGVIYVLVGDIVMLDLLLSVKEYYSSRSSLYLYISTIICQVLFGTLLLVYIPNLVPYSGHTTMQAEIPDNGAYEPLRGDDQVCPEMCASILSRLSFGWITPLMKQGYRKPITEKDVWKLDKWDQTETLNENFQRCWMSEFESSNPWLLRALNSSLGKRFWIGGIFKIGNDLSQFVGPILLNHLLASMQNGDPSWIGYIYAFSIFVGVSVGILFESRYYHNVLCVGFRLRSTLVAAIFRKSLRLTHESRKNFSMGKLMNMITTDANALQQICEQLHGLWSAPFQIIIAMVLLYQQLGVASLVGSLILVLIIPLQAFMNDKMRKLTKEGLQQTDKRVGLMNEILSAMDTVKCYAWETSFQSRIQSIRHEELSWFRKSQLLYALNRFMLNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFSVLRFPLNMLPKLLSQVANANVSLQRLEVLFSAEERNLQQNPPIVPGLPAISIKNGDFSWDPKAEKATLSNINFEIPVGSLVAIIGGTGEGKTSLISAMLGELPLVSDGNATIRGTVAYVPQISWIYNATLRENILFGSKFDHGRYWKSIDVTSLGHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSDSDVYILDDPLSALDAHIAQEVFVNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVNEGMITEQGTFEELSKCGPLFQKLMENAGKMEQVDSTEDTDSHEKTDVLPLNNEAIVELPNDTSYEKKGKLQKSVLVKKEERETGVVSWKVLMRYTSALGGLWVVSILFACYTLTEALRISSSTWLSVWTSQDSTAASRAGYFLIIYAIFSFGQVSVALANSYWLIISSLRAAKKLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDTGDIDTDVFNLMNTFLGQVWQLLSTFVLIGTVSSISLWAILPLLIFFYAAYTYYQSTAREVKRMDSITRSPVYAHFGESLNGLLSIRAYKAYDRMSSINGNFMDNNIRFTLVIIGSNNWLAVRLEILGGLMIWLIATFAVLQNARSENPAMIASTMGLLLSYTLNITSLLSGVLRQASRAENSLNSVERVDTYINLETEGQSIIETNRPPPGWPTKGSIEFENVVLRYRPELPPVLHGLSFVVPSTEKIGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGYDISTVGLVDLRRVLTIIPQSPVLFSGTVRFNLDPFDEYNDADLWEALERAHLKDVIRRNSFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFHSCTMLIIAHRLNTVIDCNRILLLDAGKVLEYNSPEKLLQNEETAFYKMGVGKSSETVRSTNWAASTQFAIASSLSSLHQHLQSPNTKDSKDILNRTKDAVITLQEVLEGKHDETIEETLTQYHVPRDRWWSTLYKIIEDLALLIKLPQDNFQQLEPDFKGRSFD 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00219 1587 SUPERFAMILY ABC transporter transmembrane region 917 1219 IPR036640 GO:0005524|GO:0016020
Trre5g00219 1587 Gene3D - 600 863 IPR027417 -
Trre5g00219 1587 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 840 IPR003439 GO:0005524
Trre5g00219 1587 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 231 1472 - -
Trre5g00219 1587 Pfam ABC transporter transmembrane region 305 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g00219 1587 Pfam ABC transporter transmembrane region 920 1181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g00219 1587 CDD ABCC_MRP_domain1 616 816 - -
Trre5g00219 1587 Gene3D - 1222 1476 IPR027417 -
Trre5g00219 1587 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g00219 1587 Pfam ABC transporter 1256 1404 IPR003439 GO:0005524
Trre5g00219 1587 SMART AAA_5 643 823 IPR003593 GO:0016887
Trre5g00219 1587 SMART AAA_5 1265 1444 IPR003593 GO:0016887
Trre5g00219 1587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 839 IPR027417 -
Trre5g00219 1587 FunFam ABC transporter C family member 2 610 857 - -
Trre5g00219 1587 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524|GO:0016887
Trre5g00219 1587 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 305 584 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g00219 1587 FunFam Multidrug resistance-associated protein member 4 1223 1474 - -
Trre5g00219 1587 CDD ABCC_MRP_domain2 1237 1457 - -
Trre5g00219 1587 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1473 IPR003439 GO:0005524
Trre5g00219 1587 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524|GO:0016887
Trre5g00219 1587 CDD ABC_6TM_ABCC_D1 306 592 IPR044746 GO:0140359
Trre5g00219 1587 FunFam ABC transporter C family member 2 882 1220 - -
Trre5g00219 1587 Pfam ABC transporter 634 769 IPR003439 GO:0005524
Trre5g00219 1587 CDD ABC_6TM_ABCC_D2 918 1214 IPR044726 GO:0140359
Trre5g00219 1587 SUPERFAMILY ABC transporter transmembrane region 290 592 IPR036640 GO:0005524|GO:0016020
Trre5g00219 1587 Gene3D ABC transporter type 1, transmembrane domain 285 599 IPR036640 GO:0005524|GO:0016020
Trre5g00219 1587 Gene3D ABC transporter type 1, transmembrane domain 880 1220 IPR036640 GO:0005524|GO:0016020
Trre5g00219 1587 FunFam ABC transporter C family member 2 280 601 - -
Trre5g00219 1587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00219 Trre-Chr5 1328753 1339888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00219 561 832 Calmodulin-binding Proteins AT2G36910 26.027 1.39e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g00219 - K05665 gmx:100811691 2598.54